Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_009236.1 Length=36690 Score E Sequences producing significant alignments: (Bits) Value seq2340 125 2e-24 >seq2340 Length=6312 Score = 125 bits (138), Expect = 2e-24 Identities = 314/471 (67%), Gaps = 21/471 (4%) Strand=Plus/Plus Query 34335 GCGCGGTCGAGCTTCACGTCATACAGGTTGATCGCGAATTCCGGGCCGTTGTAGCCTTCC 34394 ||||| |||||||||||||| ||||||||| | | || | ||||||||| || Sbjct 4449 GCGCGCTCGAGCTTCACGTCGTACAGGTTGCGTCTGTAGTCGGCGCCGTTGTACAGCTCG 4508 Query 34395 GCGAACGCTGCCCACTTCCGGGCACGAAGCGCCGCTAGCAGCTTCTTGTCGGCCGCGACG 34454 |||| | ||||| ||| |||| || || |||| | | |||||| ||| | Sbjct 4509 GCGACCTTGGCCCATTTCAGGGCCTTCAGGGCTTTGTGCAGGGTGGTATCGGCCTCGATG 4568 Query 34455 TACCGCACGAACGCGTCGAGGTGCTCGGCTTCGCCCAGCTCCATACGGGACACGAATTCG 34514 | || || || || || || ||||||| ||||| || |||| || ||||| || Sbjct 4569 AAGCGGACAAAGGCCTCCAGCTGCTCGGGCTCGCCGCGCGCCATGTGGTCGACGAAGTCC 4628 Query 34515 TCGACGCTCGC-GTAACCCAGGCGTTTCCAGTGATACGCCATGATCTGGAACGCGCCCCA 34573 | ||| ||| ||| || || || | |||||| ||| ||||||||||||| |||||||| Sbjct 4629 TGCACG-TCGATGTAGCCGAGCCGCTGCCAGTGGTACCCCATGATCTGGAAGGCGCCCCA 4687 Query 34574 GCTCGCGGACTCGTAAGCGGATGCCGCGTCGA--TG-CGCGCCGCAGTGTCGAGCCGCAC 34630 ||| || ||||| |||| | | |||| || || ||| | |||| ||| Sbjct 4688 GCTGGCCGACTCCAGGGCGGCGGTGTCATCGAGCTGACGGGCC---TGGGCGAGACGCTG 4744 Query 34631 GTATTCGGCGGCGCCGCCCTGGTAGCCGCCGCGCTTCGGGTTGACGACGCCCGGCCATCG 34690 | ||||||| |||||| |||||||||| ||| || ||||| | | | || Sbjct 4745 ATGCTCGGCGGTGCCGCCGATGTAGCCGCCGGCCTTTGGATTGACCAGGGCAGG----GT 4800 Query 34691 TGCGGCGGCAGCGTCCGCCGCTTCCCTGCCGACATTCGCGACGAGCCGCTGATACATGAC 34750 || ||||| || ||| | || ||| || ||| | |||||||| Sbjct 4801 TGAGGCGG--------GCAAGTTCGTCGGCGCGGGGCGCCTGCAGGCGCCGGTACATGAC 4852 Query 34751 GTGCCGCTCGAACAGAATCTTCGGCCGGCCGTCGTCCAGAAAGCCGACGCC 34801 || ||||||||||| ||| |||| ||||| |||||||| ||| |||| Sbjct 4853 ATGACGCTCGAACAGGATCACCGGCTTGCCGTTATCCAGAAACCCG-CGCC 4902 Score = 111 bits (122), Expect = 4e-20 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 35816 AGCACGACGCCGAGCTCGGCGAGGCCGGGGTTCGCTTCGAGCACGGCTTCAACCGTGCCC 35875 |||||| ||||| | ||||| ||||| ||||| || |||||||| ||||| ||| ||| Sbjct 5627 AGCACGGCGCCGTGGTCGGCCAGGCCAGGGTTGGCATCGAGCACCGCTTCGACCACGCCG 5686 Query 35876 GCCGTGCTGCCGTAGTGCCGCCAGCACAGCGCGTCGAGCGTCTCGCCTTGC 35926 ||||||| ||||||||||||||||||||| || |||| || ||| |||| Sbjct 5687 GCCGTGCGGCCGTAGTGCCGCCAGCACAGGGCATCGACGGTGTCGTGTTGC 5737 Score = 80.6 bits (88), Expect = 6e-11 Identities = 187/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 29779 CCGCGATGTGTTCGAGCGTCGT-GCCGCGCGCGTAGGCGAGCAGCAGGCCGCGCGCCTTG 29837 |||||| || || || ||||| | ||| || || ||||| || || ||| | Sbjct 1391 CCGCGACCTGGTCCAG-GTCGTTGTCGCCGGCCGAGCTGAGCATCACCGCGAGCGACGCT 1449 Query 29838 TCGTTGATGAGCTGCCGCAGCAGGACTTCGCGATAGGCGTTTTCCTGAAGGACGCGCGTC 29897 ||||||| |||| ||||| | | ||| || |||||||| ||||| || | || Sbjct 1450 TCGTTGACCCGCTGACGCAGGATCATTTCCCGGTAGGCGTTCTCCTGCAGCAACTTGGTG 1509 Query 29898 ACGGGCTCGGATTCGAGCGCGAG-CGTCGCGGCGATTTCCGCCTGGTGCTCGGGCGGATA 29956 | |||||| || || ||| | || ||| |||||||| || ||||| | || | || | Sbjct 1510 ATGGGCTCCGACTCCAGCTCAAGGCGT-GCGGCGATCTCGGCCTGCTCATCCGCAGGCCA 1568 Query 29957 CAGCGACACGAGGCGCGCCTTGCGCTCGGCGAACAGCGTCTCGAAGTCGAGCGGGTCGAC 30016 || ||| |||||||||||||||| | | |||||||||| | | ||||| Sbjct 1569 TAGGCTGACGGCATAAGCCTTGCGCTCGGCGAGGATCTGTTCGAAGTCGATCTGCTCGAC 1628 Query 30017 GATGTCCGGCGCGGGGAGCTGCGAAAGATCGATGGGC 30053 | | ||||||||| ||||| || ||||| ||| Sbjct 1629 CACCTGCGGCGCGGGCAGCTGACTGAGGTCGATAGGC 1665 Score = 80.6 bits (88), Expect = 6e-11 Identities = 124/177 (70%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 30206 CGCGGTTCCCACCGCATGAGCGCGGTCGCGATCGCCGCATACAGGCGAATCCGGGTTGCG 30265 ||||||||||| ||||| || || | ||| |||||||||||||||| | ||||| ||| Sbjct 1812 CGCGGTTCCCAGCGCATCAGGGCCATGGCGGTCGCCGCATACAGGCGCAGGCGGGTGGCG 1871 Query 30266 CCGTTGGCGGGCGCGTCGATGAGGTCGGGCAGTTCCGAGCCGAACGTGCGGCGCTGGATG 30325 ||||| ||| ||| | || |||||||| |||| || ||||||| || | Sbjct 1872 GCGTTGAGCGGCTGGTCAACCAGCTCGGGCAGCAGGCTGCCGTACTCTCGGCGCTCGACG 1931 Query 30326 CACGAGCCAAGCGGCGTCGAGACGATGCGGCCGATGGACTGCGCGAGGTGATCGAGC 30382 | | ||| | | || | || ||| |||||||||| |||| ||| || ||| Sbjct 1932 CGGGTGCCCTGGCGGGTGGTGAGAATGTCTTCGATGGACTGGGCGATGTGCTCCAGC 1988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117279504366024