Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq2340 199 1e-46 >seq2340 Length=6312 Score = 199 bits (220), Expect = 1e-46 Identities = 992/1544 (64%), Gaps = 87/1544 (6%) Strand=Plus/Minus Query 14080 GACATCCTCTCCACGCCGATCGGCTCGCGCGTGATGCGCCGCGACTACGGCAGCCAGGTC 14139 ||||| ||| |||| | ||| | ||||| |||||| || |||||||||| | | Sbjct 1960 GACATTCTCACCACCCGCCAGGGCACCCGCGTCGAGCGCCGAGAGTACGGCAGCCTGCTG 1901 Query 14140 CCCGACTTGATCGATCAGCCGTTGAACCCGGCAACCCGCCTGCGCACCATGTCCG----C 14195 ||||| || | || |||||| | ||| | || |||||||||||| | | | || | Sbjct 1900 CCCGAGCTGGTTGACCAGCCGCTCAACGCCGCCACCCGCCTGCGC-CTGTATGCGGCGAC 1842 Query 14196 CGCCGTGTCTGCCCTGGTGCGCTGGGAGCCGCGTATCCGCATTGCCTCGGT-GCGGTTCT 14254 |||| || |||||| |||||||||| ||||| ||| || ||||| ||| | | | || Sbjct 1841 CGCCATG---GCCCTGATGCGCTGGGAACCGCGGATCAGCCTTGCCCAGGTCGAGCTGCT 1785 Query 14255 GGATCGACGCGGACGGCAAGCCCGTGATCGACATCGAGGCCGACCGC-------GTGGAC 14307 || ||| || || | ||| | ||| || ||| | ||||| |||||| Sbjct 1784 GG-TCGGCGACCTTAGC--GGCCGCGC-CGA-ATTGAGCCTGACCGGCGTCCTGGTGGAC 1730 Query 14308 GGCC-CGCGCCGTGAAGCGGCGGGCACGCTGTCCGTGCCCCTTCGGAGCTGACCATGG-- 14364 | || |||| | | | | ||| | | ||| || || || | |||| Sbjct 1729 ACCAACGAACCGTTCAACATCCG-CACACCGC---TGCAACTGGGGGGCAGTGCATGAAT 1674 Query 14365 -CCATC------ATCGACCTGTCGCAGCTGCCGGCGCCGGCCGTGGTCGAAACGCTCGAC 14417 || || |||||||| |||||||| |||||| |||||||| | ||||| Sbjct 1673 ACCTTCCTGCCTATCGACCTCAGTCAGCTGCCCGCGCCGCAGGTGGTCGAGCAGATCGAC 1614 Query 14418 TACGAAGCCATCCTGGCCGAGCGGAAAGACTACTTTGTGTCGCTGCACCCCGCCGACCAG 14477 | |||| ||||| |||||||| || | || || || || || || || Sbjct 1613 TTCGAACAGATCCTCGCCGAGCGCAAGGCTTATGCCGTCAGCCTATGGCCTGCGGATGAG 1554 Query 14478 CGGGACGCCGCGCGCGCCACGC-TGGCGCTGGAATCCGAGCCGATCACCAAGCTCTTGCA 14536 | || || | ||| ||||| | | |||||| || ||||| ||||||||| | |||| Sbjct 1553 CAGGCCGA-GATCGCCGCACGCCTTGAGCTGGAGTCGGAGCCCATCACCAAGTTGCTGCA 1495 Query 14537 GGAGAACGCCTACCGCGAGCTGGTGTGGCGCCAGCGCGTGAACGACGCGGCGCGTGGGGT 14596 ||||||||||||||| || || | ||| ||||| || ||||| ||| ||| | ||| Sbjct 1494 GGAGAACGCCTACCGGGAAATGATCCTGCGTCAGCGGGTCAACGAAGCGTCGCTCGCGGT 1435 Query 14597 CATGCTGGCCTTCGCCGAAGGGGAAGACCTGGAGCAGATTGCGGCGAACTTCAACGTGCA 14656 ||||| || |||| | | |||||||| ||| | |||| ||||||||||| | Sbjct 1434 GATGCTCAGCTCGGCCGGCGACAACGACCTGGACCAGGTCGCGGGCAACTTCAACGTCAA 1375 Query 14657 GCGTCTGACCATCACGCCGGCTGACACCACCA--CCGTGCCGCCGACGCCCGCCGTGATG 14714 ||| ||| ||| | |||| || | || |||| || || || ||| || Sbjct 1374 GCGCCTGGTCATTCAGGCGGC--CCAGCCGCAGGCCGTTCCACCTGTACCGCAGGTGCTG 1317 Query 14715 GAGGGCGACGACTCGCTGCGCGAGCGCGCACAGGAAGCGTTTGAAGGGCTGTCCGTGGCC 14774 || | |||||| | |||||||||||||| || || || ||||||||| | ||| Sbjct 1316 GAAAGTGACGACGCACTGCGCGAGCGCGCGCAAATGGCATTCGAAGGGCTGAGCACCGCC 1257 Query 14775 GGCCCGACCAAGGCCTACGAGCAGTT---CGCGCGCTCGGCTGACGGCCGGGTGGCGGAC 14831 |||||| || || ||| | | || ||| ||| | ||||||||| |||| |||||| Sbjct 1256 GGCCCGCGTAACGCTTAC-ATC--TTCCACGCCCGCGCCGCTGACGGCAGGGTCGCGGAC 1200 Query 14832 G-CGCGCGCGATCAGCCCGGCCGGCGCGGAGGTGGTGGTCTCGGTGC-TGTCGCACCTGA 14889 | | || ||| ||||||| | || | || || ||| | |||| | ||| | | Sbjct 1199 GCCACGGCCGA-CAGCCCGTCACCGGCCGTGGCAGTCGTCACCGTGCAGGCCGCGCAAG- 1142 Query 14890 ACGACGGCGCGGCCGACGAGAGCCTGCTGGCGGCTGTACGCACCGCGTTGAGCGATGACG 14949 ||||| | ||| |||| |||||| || | || || | | ||| ||| || | Sbjct 1141 GGGACGGTACTGCCAACGAAGCCCTGCTCGCCACGGTGCGTAGCTACCTGAACGACGAGG 1082 Query 14950 ATACCCGGCCGCTCGGCGACCGCCTGACGGTGCAATCCGCCACCATCGTCCCATACCGCA 15009 | || || | | ||||||| |||| || ||| |||| ||| |||| || | Sbjct 1081 ACCGTCGCCCCGTGGCCGACCGCTTGACCGTTCAAGGCGCCCAAATCATCCCGTATCAGG 1022 Query 15010 TCCGTGCCACGCTGTACCTGGCATCG---GGGCCGGCGGCCGAGCCGATCCTGGACGCGG 15066 || || | ||||| |||| | || || || | ||||| || ||| ||||||| | Sbjct 1021 TCAAAGCGAAGCTGTTCCTGAAAACGCTCGGCCCCGAAGCCGAACCCATCATGGACGCCG 962 Query 15067 CTG-GCA-----AGCGGGCCGACGTCTACCGCACCACGCGGCGGCGCATCGGTCGCGACA 15120 | | ||| | |||| |||| ||||| ||||| || | || | || Sbjct 961 CCGAGCAGAAACTTCTGGCCTTCGTC-----CACCA-ACGGCGCCGACTGGG--GATGCA 910 Query 15121 TCAACCG--CTCGGCGATCACGGCGGCGCTGCATGTGGAGGGCGTGGAAAAGCTGGTGCT 15178 | || || || || ||||| ||||||| || || ||| ||| | | ||| Sbjct 909 GGTATCGGAGTCCGCCATTCATGCGGCCTTGCATGTCGAAGGTGTGCGCAAGGTCGAGCT 850 Query 15179 GCACGAACCGGCCGAAGACATCGCGCTCGATCTGACGCAGGCGGGCTACTGCACCGGCGT 15238 | | | | | || || |||| | || | ||||| | ||||||| | | Sbjct 849 TGAGGCATGGTCGGATATCAACGCGAGC---CTCAGCCAGGCCCCGTTCTGCACCTCCAT 793 Query 15239 GGATATCGTCAACGGGGGC-ACCAGTGAGTAGC-GCAACCCTGTTGCCGCCGAACGCGAC 15296 | ||| | | || || | | |||| || || ||| || ||||| || Sbjct 792 TGTCCTCGCCCAGGGAAGCGAGCCATGAG--GCTGCTCCCCGGT--------AACGCCAC 743 Query 15297 GCCGCTGGAGCGTCGCGCCGC-GCAGACGGGCGCACGCATCGAACGCGTGCCGGTGCCGC 15355 || ||||| || | || || | || | | || | ||||| || || ||||||||| Sbjct 742 ACCACTGGAACGCCAGGCGGCTGAAGCCTTG-GCCCAGATCGAGCGTGTACCGGTGCCGA 684 Query 15356 TGCGCGACCTGTGGAACCCAGCCACCTGTCCGGCCGAGCTGTTGCCCTTCCTGGCCTGGT 15415 | ||||||||| ||||| | ||| || | | |||| ||||||||||||||||| Sbjct 683 TCCGCGACCTGATCAACCCTGAGCGCTGCCCCGTGGCGCTGCTGCCCTTCCTGGCCTGGG 624 Query 15416 CGTTTTCCGTGGACCGCTGGAACCCGGCCTGGCCGCTCGCCACCAAGCGCGCCGTGACGG 15475 ||||||| | || |||||| || ||| || ||| ||||||| | || Sbjct 623 CGTTTTCAATCGATCGCTGGGACAGCAGTTGGTCGGAGGCCGTCAAGCGCCGGGCGATTC 564 Query 15476 CCGCCTCCTACTTCGTGCACCGCAAGAAGGGCACGATCGGCGCGCTTCGCCGCGCGGTGG 15535 | | || ||||| || ||| | |||||||| ||||| || || ||||| | ||| | Sbjct 563 GCTCGTCGTACTTTGTCCACTCCCGCAAGGGCACCATCGGTGCCCTGCGCCGTGTGGTTG 504 Query 15536 AGCCGCTGGGCTTCCTGATTCGCGTCATCGAGTGGTGGCAGACC 15579 |||| ||||||| | |||| ||| | ||||||| || ||| Sbjct 503 AGCCACTGGGCTACTTGATCGAGGTCGTGGAGTGGTTTCAAACC 460 Score = 178 bits (196), Expect = 3e-40 Identities = 383/561 (68%), Gaps = 20/561 (4%) Strand=Plus/Minus Query 10325 TGGGCGTGCCCCTGGAGGCGGTGCGCGCGGTCAACGAGGTTGAGAGCCGGGGGAGCGGGT 10384 |||||||||| ||| ||| | || | |||||||| || |||| |||||| Sbjct 4953 TGGGCGTGCCGGTGGCGGCTATCTATGCCCTGAACGAGGTCGAATCGAAGGGGCGCGGGT 4894 Query 10385 TCCTGCCGGACGGACGGCCCGTGATCCTGTTCGAGCGGCACGTCATGTACCGGCAGCTGC 10444 | ||| |||| ||| ||||||||||||||||| || ||||||||||||| |||| Sbjct 4893 TTCTGGATAACGGCAAGCCGGTGATCCTGTTCGAGCGTCATGTCATGTACCGGCGCCTGC 4834 Query 10445 GCGAGGCCGACCAGGATGCGGACGCGCTCGC--GGCTCGGTATCCCAACATCGTCAACCC 10502 |||| | || | || |||| || || | ||| | || | | ||||| || Sbjct 4833 ---AGGC-GCCCCGC--GCCGACGAACTTGCCCGCCTCA--ACCCTGCCCTGGTCAATCC 4782 Query 10503 GA--GCCGTGGCGGCTACGTGGGCAAGGCCGGGGAGCACATGCGGCTCGCTCAGGCCATC 10560 | |||| |||||||| | ||| ||| ||||| ||| ||||| |||||| | Sbjct 4781 AAAGGCCG--GCGGCTACATCGGCGGCACCGCCGAGCATCAGCGTCTCGCCCAGGCC--C 4726 Query 10561 GCCA--TCGACCGCGATTGCGCCCTTGCGTCGGCGAGCTGGGGGCTGTTTCAAGTCATGG 10618 | || |||| | |||||| | |||||| |||||||| || || |||||| Sbjct 4725 GTCAGCTCGATGACACCGCCGCCCTGGAGTCGGCCAGCTGGGGCGCCTTCCAGATCATGG 4666 Query 10619 GATACCACTGGGAGCGGTTGGGGTATC-CGAGCGTGCAGGCATTCGCGGACGCCATGCAA 10677 | ||||||||| ||||| | || || ||| |||||||| |||| ||| |||| Sbjct 4665 GGTACCACTGGCAGCGGCTCGGCTACATCGA-CGTGCAGGACTTCGTCGACCACATGGCG 4607 Query 10678 AGCGGCGAGGGAGCGCAGCTCGACGCCTTCGTGCGGTTCGTCACCAGTGACCCCGCCTTG 10737 |||||||| | |||||| || ||||| || || ||| || || || || || Sbjct 4606 CGCGGCGAGCCCGAGCAGCTGGAGGCCTTTGTCCGCTTCATCGAGGCCGATACCACCCTG 4547 Query 10738 CACAAGGCGCTCACGGGCGGGAAGTGGTCCGCCTTCGCCGCGCTCTACAACGGGCCGGCC 10797 ||||| || || | || | ||| ||| || |||||| ||| |||||||| | | | Sbjct 4546 CACAAAGCCCTGAAGGCCCTGAAATGGGCCAAGGTCGCCGAGCTGTACAACGGCGCCGAC 4487 Query 10798 TACAAGGACAACCTGTACGACGTGAAGCTGGCGCGCGCCTTCGCACGCTACCAGGCCGAA 10857 |||| ||||||||||||||||||||| | ||||||||||| || |||||| | Sbjct 4486 TACAGACGCAACCTGTACGACGTGAAGCTCGAGCGCGCCTTCGAGCGGCACCAGGACCGC 4427 Query 10858 GAGCGGGAGGCCGCATGAACC 10878 | | || ||| |||||| || Sbjct 4426 GCGTTGGTGGCTGCATGAGCC 4406 Score = 107 bits (118), Expect = 5e-19 Identities = 170/240 (71%), Gaps = 13/240 (5%) Strand=Plus/Minus Query 13396 CATGGATACCGCAGACCTCGCCCGCCTTCTCGAAAACCTCTTGCGCCTCGGCACCATCGC 13455 |||| | | ||| |||||| |||||| || |||||||| | ||| | ||||||||||| Sbjct 2587 CATGAACATCGCCGACCTCAACCGCCTGCTGGAAAACCTGATCCGCTTTGGCACCATCGC 2528 Query 13456 CGAGATACGCCACAGCACGCCGCCGGCCGTGCGCGTGCGCACCGGGGGCATCACCACCAC 13515 |||| | | |||| |||| |||| ||| |||| ||||| |||| | || || Sbjct 2527 CGAGGTGCAGCACAAGCCGCC-CCGG--GTGAAGGTGCAAACCGGCGGCAACCTGACGAC 2471 Query 13516 CTGGCGCCCCTGGGCCGAGCGCCGCGCCGGCCGGACGCGCACC-----TGGAACCCGCCG 13570 ||||| || || || ||| || |||||| ||| | | ||| ||||||| Sbjct 2470 CTGGCTGCCGTG----GATGGCCTGGCGGGCCGG-CGCCGATCAGGAATGGGACCCGCCC 2416 Query 13571 ACCGTGGGCGAGCAGGTGCTGCTGTTCTGCCCCAGCGGCGACACGGCCAACGCCGTCATC 13630 ||||| ||| ||||| || ||| ||| |||||||||| | | |||||||| |||| || Sbjct 2415 ACCGTAAACGAACAGGTACTACTGCTCTCCCCCAGCGGCCAGATGGCCAACGGCGTCGTC 2356 Score = 105 bits (116), Expect = 2e-18 Identities = 137/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 9067 CGCCGCGATGCGCGCTGGGCAGTCAGCGACATCACCGGCGCTGCGCGCACCACCGTGGAG 9126 |||||||| ||||||||| ||| | ||| || || | ||||||| ||||||||| Sbjct 5828 CGCCGCGACCAGCGCTGGGCCGTCCGGGACTTCCTTGGTACCCCGCGCACAACCGTGGAG 5769 Query 9127 CTGATCTGATGCGCGTGCGGG--CGATCCAGGG----CGACACCATCGACGCCATCTGCC 9180 ||| | ||||| || || | ||| || | ||||||| |||| ||| | ||| Sbjct 5768 CTGCTGTGATGGCCGAGCAGCGCCGAACCCAGCAACACGACACCGTCGATGCCCTGTGCT 5709 Query 9181 GGCGGGTCTACGGCCGCACGGCGAGCGTGACGGAAGCCGTGCTGGCCGCCAACCCCGGCA 9240 ||||| ||||||||||||||| ||||| ||||| ||||| | |||||||| ||| Sbjct 5708 GGCGGCACTACGGCCGCACGGCCGGCGTGGTCGAAGCGGTGCTCGATGCCAACCCTGGCC 5649 Query 9241 TCGCCGAC 9248 | |||||| Sbjct 5648 TGGCCGAC 5641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123903114920364