Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 seq1 91.5 1e-13 seq5 89.7 4e-13 seq8 86.0 5e-12 >seq6 Length=53892272 Score = 100 bits (110), Expect = 2e-16 Identities = 165/236 (70%), Gaps = 18/236 (8%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || ||||||| || || ||| ||||||||||||||| ||||| ||| Sbjct 43309273 CCTCCCCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCC 43309214 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| | || |||| |||||||| ||||| || || | |||||| ||| || Sbjct 43309213 AAGGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 43309154 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATC-AGT-------AG 34072 | | || |||||| | ||||||||| ||||| |||| | | || Sbjct 43309153 ATCCCTTCCTTGTCC-TGGATTTTTGCTT--------TCACATTATCGACTGTGTCCGAG 43309103 Query 34073 ATTCGCA-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || |||| || ||||| || || || || |||||||||||||||||||| Sbjct 43309102 CTTTCCACCTCGAGGGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 43309047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||| || ||||||| ||| || ||| ||||||||||||||| ||||| ||| Sbjct 13066055 CCACCTCTCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGAATGTTATAATCAGCC 13066114 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || | || || | |||||||||||||| || || | |||||| ||| Sbjct 13066115 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCC 13066168 >seq1 Length=40297282 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| |||| ||||||||| ||||| || || ||||||||| || |||||||| || Sbjct 18088772 CCTCCCCTCAACCGCAGCACGAGATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGCG 18088713 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||| ||||| || || || |||||||||||| ||| Sbjct 18088712 AGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGCGGG 18088653 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | | ||| |||||| ||| || Sbjct 18088652 ATCCCCTCCTTGTCCTGAATCTT 18088630 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| |||||||| |||||||| || ||| ||||| || |||||||| || Sbjct 18075905 ACCTCCCCTCAAGCGCAGCACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAATCGGC 18075846 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| |||| ||||| ||||| || || || |||||||||||| || Sbjct 18075845 GAGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGTGG 18075786 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| ||||| Sbjct 18075785 GATGCCCTCCTTGTCCTGGATTTT 18075762 >seq5 Length=74729908 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | || || ||||| || ||||| || ||||||||| ||||||||||| Sbjct 70523225 GAATCCACCACGAAGACGGAGCACGAGGTGAAGGGTCGACTCCTTCTGTATGTTGTAATC 70523166 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||| || |||| ||||| ||||||||||| || ||||| | |||||| ||| Sbjct 70523165 CGCCAGGGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGG 70523106 Query 34017 CGGCACGCTCTCTTTGTCC 34035 || | || ||| |||||| Sbjct 70523105 GGGGATGCCCTCCTTGTCC 70523087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| || || | || || ||||| || ||||| || ||||||||| ||||||||||| Sbjct 64848847 GAATCCACCACGAAGACGGAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATC 64848788 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||| || |||| |||| ||||||||||| || ||||| | |||||| ||| Sbjct 64848787 CGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGG 64848728 Query 34017 CGGCACGCTCTCTTTGTCC 34035 || | || ||| |||||| Sbjct 64848727 GGGGATGCCCTCCTTGTCC 64848709 >seq8 Length=74329289 Score = 86.0 bits (94), Expect = 5e-12 Identities = 165/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| |||||||||| ||||| ||| ||||||||| ||||||||||| ||| Sbjct 36266735 CCTCCCCTCAGTCGCAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCC 36266676 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || || | ||| || || ||||| || || | |||||||| | Sbjct 36266675 AA-AGTC-CTACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGGG 36266618 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGAT- 34074 | | || || |||||| | | |||| |||| || | | || | || | || | Sbjct 36266617 GAATGCCTTCCTTGTCC-TGAATTTTGGCTT--TGACATTGTCAATGGTGTC-GGAGCTC 36266562 Query 34075 TCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || ||| | || || || || || ||||| || || ||||||||||||||| Sbjct 36266561 TCAACTTCCAAAGTGATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTGCATT 36266508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397038441130702