Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 2e-16
seq1 91.5 1e-13
seq5 89.7 4e-13
seq8 86.0 5e-12
>seq6
Length=53892272
Score = 100 bits (110), Expect = 2e-16
Identities = 165/236 (70%), Gaps = 18/236 (8%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| || || || ||||||| || || ||| ||||||||||||||| ||||| |||
Sbjct 43309273 CCTCCCCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCC 43309214
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
|| ||| | || |||| |||||||| ||||| || || | |||||| ||| ||
Sbjct 43309213 AAGGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 43309154
Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATC-AGT-------AG 34072
| | || |||||| | ||||||||| ||||| |||| | | ||
Sbjct 43309153 ATCCCTTCCTTGTCC-TGGATTTTTGCTT--------TCACATTATCGACTGTGTCCGAG 43309103
Query 34073 ATTCGCA-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| || |||| || ||||| || || || || ||||||||||||||||||||
Sbjct 43309102 CTTTCCACCTCGAGGGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 43309047
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| |||||||| || ||||||| ||| || ||| ||||||||||||||| ||||| |||
Sbjct 13066055 CCACCTCTCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGAATGTTATAATCAGCC 13066114
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
| || | || || | |||||||||||||| || || | |||||| |||
Sbjct 13066115 AGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCC 13066168
>seq1
Length=40297282
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| |||| ||||||||| ||||| || || ||||||||| || |||||||| ||
Sbjct 18088772 CCTCCCCTCAACCGCAGCACGAGATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGCG 18088713
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| || |||| |||| ||||| ||||| || || || |||||||||||| |||
Sbjct 18088712 AGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGCGGG 18088653
Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043
| | ||| |||||| ||| ||
Sbjct 18088652 ATCCCCTCCTTGTCCTGAATCTT 18088630
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| |||| |||||||| |||||||| || ||| ||||| || |||||||| ||
Sbjct 18075905 ACCTCCCCTCAAGCGCAGCACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAATCGGC 18075846
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| || |||| |||| ||||| ||||| || || || |||||||||||| ||
Sbjct 18075845 GAGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGTGG 18075786
Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043
| || ||| |||||| |||||
Sbjct 18075785 GATGCCCTCCTTGTCCTGGATTTT 18075762
>seq5
Length=74729908
Score = 89.7 bits (98), Expect = 4e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956
||| || || | || || ||||| || ||||| || ||||||||| |||||||||||
Sbjct 70523225 GAATCCACCACGAAGACGGAGCACGAGGTGAAGGGTCGACTCCTTCTGTATGTTGTAATC 70523166
Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016
|||| || |||| ||||| ||||||||||| || ||||| | |||||| |||
Sbjct 70523165 CGCCAGGGTGCGGCCGTCCTCCAACTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGG 70523106
Query 34017 CGGCACGCTCTCTTTGTCC 34035
|| | || ||| ||||||
Sbjct 70523105 GGGGATGCCCTCCTTGTCC 70523087
Score = 84.2 bits (92), Expect = 2e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956
||| || || | || || ||||| || ||||| || ||||||||| |||||||||||
Sbjct 64848847 GAATCCACCACGAAGACGGAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATC 64848788
Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016
|||| || |||| |||| ||||||||||| || ||||| | |||||| |||
Sbjct 64848787 CGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGG 64848728
Query 34017 CGGCACGCTCTCTTTGTCC 34035
|| | || ||| ||||||
Sbjct 64848727 GGGGATGCCCTCCTTGTCC 64848709
>seq8
Length=74329289
Score = 86.0 bits (94), Expect = 5e-12
Identities = 165/234 (71%), Gaps = 12/234 (5%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| ||||| |||||||||| ||||| ||| ||||||||| ||||||||||| |||
Sbjct 36266735 CCTCCCCTCAGTCGCAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCC 36266676
Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
|| ||| || | || || | ||| || || ||||| || || | |||||||| |
Sbjct 36266675 AA-AGTC-CTACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGGG 36266618
Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGAT- 34074
| | || || |||||| | | |||| |||| || | | || | || | || |
Sbjct 36266617 GAATGCCTTCCTTGTCC-TGAATTTTGGCTT--TGACATTGTCAATGGTGTC-GGAGCTC 36266562
Query 34075 TCGCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128
|| ||| | || || || || || ||||| || || |||||||||||||||
Sbjct 36266561 TCAACTTCCAAAGTGATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTGCATT 36266508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397038441130702
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |