Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq9 165 1e-35 seq6 96.9 4e-15 >seq9 Length=39018107 Score = 165 bits (182), Expect = 1e-35 Identities = 310/452 (69%), Gaps = 4/452 (1%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| ||||| |||||||||||||||||||| |||||||| | || ||| |||||| Sbjct 26347600 GTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCAT 26347659 Query 125818 AAAATCAAATGGGTTCTTTGAGT--TCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 | || || |||||| | || | || ||| | || || | | ||| || Sbjct 26347660 CCAGTCGAACGGGTTCGTCACGTCGTACACCTTGCCG-CAGCCGAGCGCGCC-GAGAAGC 26347717 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | |||| |||| ||||||| |||| || |||||| || | ||| Sbjct 26347718 CGGTCGGCGACGAACTCGATGTACTGGCCCATCAGGTCGCTGTTCATCCCAACCAGGGCG 26347777 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || |||||||| ||| |||| || ||| || || ||||| ||||||||||| | Sbjct 26347778 CACGGCAGCGCGTCGCAGACGAACTCCCGCTCGATGTCGACGGCCTCCCGCACGATCCCC 26347837 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCT 126055 | | ||| | | || | || |||| | | |||| ||| || || Sbjct 26347838 TTCACCCGCTCCTCGCTCGGCTTGTTCCGCAGCAGCGAGTAGAGGAGGCAGGCGAAGTCG 26347897 Query 126056 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGA 126115 |||||| |||||||| || |||||||| || ||||||||| || || |||||||| Sbjct 26347898 CAGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGG 26347957 Query 126116 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||||||||||| | |||||| || || || || || ||||||||||| ||||| || Sbjct 26347958 CCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCAACG 26348017 Query 126176 CACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 || ||||| || | ||| ||||| || ||||| Sbjct 26348018 CAGGCGAAGGCGAGGAGGCGCTCCGCGAAGGA 26348049 >seq6 Length=53892272 Score = 96.9 bits (106), Expect = 4e-15 Identities = 189/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||||||||| || |||||||| ||||| || | ||||||||| | Sbjct 15329246 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 15329187 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 | ||| || | | ||| | || || || || || ||||| || || || || || Sbjct 15329186 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAATAAACACAATGCA 15329127 Query 10996 CGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || || ||| || || ||||| | || | |||||| ||||| ||||||| Sbjct 15329126 AGG-TGCTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCACCAACACCCA 15329068 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114 |||||| |||||||| | || || | ||| || ||| || ||| | ||||| | Sbjct 15329067 CAAACAACTCCACAAATTCGGATGCCGCACACGAGAAGAATGGCACGCCAGCCTCACCGG 15329008 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | | || | || | ||||||||||| ||||| || Sbjct 15329007 CCACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGG 15328971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597316631279080