Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 9e-15 seq8 89.7 4e-13 >seq6 Length=53892272 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || |||||||| || || |||||||||||||| || || | | | || || Sbjct 13058896 AACCAAGTGAAGGGTGGATTCCTTTTGTATGTTGTAGTCTGCAAGCGTCCGGCCATCCTC 13058955 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| |||||||| | ||||| ||||| ||||| ||||| ||||| ||||| Sbjct 13058956 GAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCTGGGGGAATCCCTTCTTTGTCCTG 13059015 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || ||| | || || ||||| | | || || || | |||||||| || Sbjct 13059016 GATTTTGGCCTTCACATTGTCAATGGTATCAGAACTCTCGACCTCGAGAGTAATGGTCTT 13059075 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| || ||||| Sbjct 13059076 GCCAGTGAGGGTCTTCACAAAGATCTGCAT 13059105 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || | ||| || || || || ||||| |||||||||||| Sbjct 13065143 CCACCACGCAGACGGAGGACAAGATGGAGAGTCGACTCCTTTTGAATGTTGTAATCGGCC 13065202 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | || | || || | ||| || || ||| | ||||| ||||| ||||| ||| Sbjct 13065203 AGACTCCTACCATCCTCGAGTTGCTTCCCTGCGAAAATCAACCGCTGCTGGTCTGGGGGA 13065262 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || || ||| || | || || || || | | || || Sbjct 13065263 ATTCCTTCCTTGTCCTGTATCTTCGCTTTGACGTTATCAATCGTGTCAGAACTCTCCACT 13065322 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || || || || || || |||||||| ||||| Sbjct 13065323 TCCAAGGTGATAGTCTTGCCGGTAAGGGTCTTCACAAAAATCTGCAT 13065369 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| || || ||||| || ||||| ||||| ||| | || | ||||| Sbjct 13058668 AACCAAGTGAAGAGTCGATTCTTTCTGGATGTTATAATCTGCCAGAGTCCTGCCATCTTC 13058727 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || || || ||||| | || | | ||| || || ||||| ||||||||||| Sbjct 13058728 TAGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTG 13058787 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| ||| ||| | || || || || | || || || || || || ||||| Sbjct 13058788 AATTTTCGCTTTGACATTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTT 13058847 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || ||||| |||||||| Sbjct 13058848 CCCAGTAAGAGTCTTGACAAAGATTTGCAT 13058877 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| || || ||||| || ||||| ||||| ||| | || | || || Sbjct 13065388 AACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGCCAGAGTCCTACCATCCTC 13065447 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || ||||| ||||| | || | | ||| || || ||||| ||||||||||| Sbjct 13065448 TAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTG 13065507 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| ||| ||| | || || ||||| | || || || || || || || || Sbjct 13065508 AATTTTCGCTTTGACATTGTCGATGGTATCAGAGCTCTCCACTTCCAAAGTGATTGTCTT 13065567 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| |||||||| Sbjct 13065568 TCCAGTAAGGGTCTTGACAAAGATTTGCAT 13065597 >seq8 Length=74329289 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || || || || |||||||| || ||| ||| | || || Sbjct 36266261 ACCAAGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCCGCCAGAGTTCGGCCATCCTCA 36266202 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| ||||| ||| | ||||| | ||| || || ||||||||||||||||| Sbjct 36266201 AGTTGCTTGCCCGCGAAAATCAACCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGG 36266142 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| |||||| | || || || || | |||| || |||| |||||| || || Sbjct 36266141 ATTTTCGCCTTTACATTATCGATGGTGTCCGAACTTTCAACCTCTAGGGTAATCGTCTTG 36266082 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| || ||||| Sbjct 36266081 CCAGTGAGGGTCTTCACAAATATCTGCAT 36266053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357370434855035