Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 105 6e-18 seq6 102 7e-17 seq8 100 3e-16 seq5 89.7 5e-13 >seq1 Length=40297282 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||||||||| | | || || ||||| || || ||||| |||||||| |||||| | Sbjct 18078902 CCTCCGCGGAGGCGGAGAACGAGGTGCAGGGTAGACTCCTTCTGGATATTGTAATCGGCG 18078961 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || || || ||| | || | || |||||||| || || Sbjct 18078962 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGG 18079021 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | ||||||||| |||||| Sbjct 18079022 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGAC 18079080 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 ||||| || | || |||||||| || || || || || || |||||| || Sbjct 18079081 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATCTCG 18079132 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||||||||| | ||| || || ||||| || ||||| ||||| || || ||| Sbjct 18075451 ATGCCTCCGCGGAGCCTGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCG 18075392 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || | || || || ||| | || | || |||||||| || Sbjct 18075391 GCGAGGGTCCTGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGA 18075332 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || |||| || | || | |||||||| ||| Sbjct 18075331 GGGATGCCCTCCTTGTCCTGTATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGAGCTCTC 18075273 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || | || |||||||| || || || || || || |||||| Sbjct 18075272 GACCTCGAGCGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATC 18075221 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||||| || ||||| ||||| || ||||| || || || |||||| Sbjct 18088547 ATGCCGCCACGGAGCCTCAGGACGAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCG 18088488 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || || || ||| | || | | ||||||||||| Sbjct 18088487 GCGAGGGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGA 18088428 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| || || || || || |||| || | || | ||||||||| ||| Sbjct 18088427 GGGATGCCTTCCTTGTCCTGTATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTC 18088369 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||||||||||| || || || || || || ||||| Sbjct 18088368 CACCTCGAGCGTGATGGTTTTGCCGGTCAGGGTCTTGACGAATATCTGCAT 18088318 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||||||||| | ||| || || || || || ||||| ||||| || || ||| | Sbjct 18056356 CCACCGCGGAGCCTGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 18056415 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| | || || || ||| | || | || |||||||| || || Sbjct 18056416 AGGGTGCGGCCGTTGTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGG 18056475 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | ||||||||| |||||| Sbjct 18056476 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGAC 18056534 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| || | || |||||||| || || || || || || |||||| Sbjct 18056535 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATC 18056583 >seq6 Length=53892272 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | |||||||||||| ||||| || || || ||||||||||| ||||| || Sbjct 53467447 TTCCTCCCCTGAGCCTCAACACCAGATGAAGAGTCGACTCCTTTTGGATGTTATAGTCCG 53467388 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | ||| ||| |||||||| || || || | |||||||| ||||||||||| | Sbjct 53467387 CAAGAGTTCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAATCGCTGCTGGTCCGGAG 53467328 Query 45232 GAATGCCTTCTTTATC 45247 |||| ||||| || || Sbjct 53467327 GAATACCTTCCTTGTC 53467312 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | || || || || || |||||||||||||| || || ||| Sbjct 43309960 ATTCCACCACGGAGACGGAGGACAAGGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCG 43309901 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | |||||| || || | |||| | |||||||||||| Sbjct 43309900 GCCAATGTCCTGCCATCTTCAAGTTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCCGGA 43309841 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| || |||||||| || | || || || || || ||| Sbjct 43309840 GGAATACCCTCTTTGTCCTGAATTTTAGCCTTCACATTGTCGACAGTATCAGAGCTTTCG 43309781 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| ||| || || || ||||| || || ||||| ||||| Sbjct 43309780 ACCTCAAGAGTAATCGTCTTCCCAGTGAGAGTCTTCACGAAAATCTGCAT 43309731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || || || || | || ||| || | ||| Sbjct 13058903 TGAAGGGTGGATTCCTTTTGTATGTTGTAGTCTGCAAGCGTCCGGCCATCCTCGAGTTGC 13058962 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| || |||||||| || ||||| |||||||| || || ||||| Sbjct 13058963 TTGCCAGCAAAGATCAACCGCTGCTGGTCTGGGGGAATCCCTTCTTTGTCCTGGATTTTG 13059022 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | || | ||| || ||| |||||| |||||||||| || ||||| || Sbjct 13059023 GCCTTCACATTGTCAATGGTATCAGAACTCTCGACCTCGAGAGTAATGGTCTTGCCAGTG 13059082 Query 45318 AGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| || |||||| Sbjct 13059083 AGGGTCTTCACAAAGATCTGCATC 13059106 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | ||| | || || || || ||||| || || ||||||||| Sbjct 43309276 ATGCCTCCCCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCG 43309217 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| ||| |||| || || || || | || | | ||||||||||| Sbjct 43309216 GCCAAGGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGA 43309157 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || || |||||| ||| | || || ||||| || || Sbjct 43309156 GGGATCCCTTCCTTGTCCTGGATTTTTGCTTTCACATTATCGACTGTGTCCGAGCTTTCC 43309097 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || ||||| || || ||||| ||||| ||||||||| Sbjct 43309096 ACCTCGAGGGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCATC 43309046 >seq8 Length=74329289 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || | || ||| | || || || || ||||| ||||| || ||||| Sbjct 36266738 ATGCCTCCCCTCAGTCGCAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCC 36266679 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||| || | |||||| || || | || | | |||||| || || Sbjct 36266678 GCCAAAGTCCTACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGCCTTTGCTGATCTGGG 36266619 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || |||||||| ||||| || | ||||||||| ||| Sbjct 36266618 GGAATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTCTCA 36266559 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||| || || ||||| || || ||||| |||||||| Sbjct 36266558 ACTTCCAAAGTGATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTGCAT 36266509 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||| | | ||| ||||| || ||||| ||||| || || || ||||| Sbjct 36266966 ATTCCACCGCGGAGGCGAAGCACAAGATGTAGAGTTGACTCCTTCTGAATGTTGTAATCC 36266907 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | | || | | ||| || | ||| || || ||| | ||||| | ||||| || | Sbjct 36266906 --GCCAGTGTCCGGCCATCCTCAAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGATCTG 36266849 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | |||||||||||||| || || || || ||||| || | ||| || || || Sbjct 36266848 GGGGAATGCCTTCTTTGTCCTGTATCTTAGCTTTGACATTATCAATGGTATCCGAGCTCT 36266789 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | ||| | || || || || || || || |||||||| ||||| Sbjct 36266788 CAACTTCCAAAGTTATGGTCTTCCCAGTAAGGGTCTTGACAAAAATCTGCAT 36266737 >seq5 Length=74729908 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || || || || || |||||||| ||||| || || ||| Sbjct 70522539 ATACCTCCACGAAGACGGAGGACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTCG 70522480 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || || | || ||||| ||| | |||| | ||||||||||| Sbjct 70522479 GCGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGCCTCTGCTGGTCCGGG 70522420 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || || || || |||| || | || | ||||||||| ||| Sbjct 70522419 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTCTC 70522361 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || |||||||| || || || || || || ||||| Sbjct 70522360 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 70522310 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||| | ||| || || || || |||||||| ||||| || || ||| Sbjct 64847940 ATGCCTCCCCTGAGCCTGAGCACAAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCG 64847881 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | |||| | |||||||||||| Sbjct 64847880 GCCAAGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGC 64847821 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || || | | || | | | || | || | |||||| || ||| Sbjct 64847820 GGGATCCCTTCCTTGTCCTGGA-TCTTGGCCTTAACGTTGTCGATGGTGTCAGAGCTCTC 64847762 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| || || || || || || |||||| Sbjct 64847761 CACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATC 64847710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451975226651960