Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9 161 1e-34 seq6 98.7 1e-15 >seq9 Length=39018107 Score = 161 bits (178), Expect = 1e-34 Identities = 309/452 (68%), Gaps = 4/452 (1%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| |||||||||||||||||||||||||| |||||||| | || ||| |||||| Sbjct 26347600 GTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCAT 26347659 Query 127291 AAAATCAAATGGGTTCTTTGAGT--TCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 | || || |||||| | || | || ||| | || || | | ||| || Sbjct 26347660 CCAGTCGAACGGGTTCGTCACGTCGTACACCTTGCCG-CAGCCGAGCGCGCC-GAGAAGC 26347717 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | |||| |||| ||||||| |||| || |||||| || | ||| Sbjct 26347718 CGGTCGGCGACGAACTCGATGTACTGGCCCATCAGGTCGCTGTTCATCCCAACCAGGGCG 26347777 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || |||||||| ||| |||| || ||| ||||| || || ||||| ||||| | Sbjct 26347778 CACGGCAGCGCGTCGCAGACGAACTCCCGCTCGATGTCGACGGCCTCCCGCACGATCCCC 26347837 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCT 127528 | | ||| | | || | || || | | | |||| || || || Sbjct 26347838 TTCACCCGCTCCTCGCTCGGCTTGTTCCGCAGCAGCGAGTAGAGGAGGCAGGCGAAGTCG 26347897 Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588 |||||| |||||||| || |||||||| || ||||||||| || || |||||||| Sbjct 26347898 CAGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGG 26347957 Query 127589 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 ||||||||||| | |||||| || || || || ||| ||||||||||||||||| || Sbjct 26347958 CCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCAACG 26348017 Query 127649 CACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 || ||||| || | || ||||| || ||||| Sbjct 26348018 CAGGCGAAGGCGAGGAGGCGCTCCGCGAAGGA 26348049 >seq6 Length=53892272 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||||||||| || |||||||| ||||| || | ||||||||| | Sbjct 15329245 AACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCCT 15329186 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | ||| || | | ||| | || || || || || || ||||| || || || || Sbjct 15329185 CCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAATAAACACAATGCAA 15329126 Query 12912 GGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 ||| | ||| || || ||||| | || | |||||| ||||| |||||||| Sbjct 15329125 GGT-GCTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCACCAACACCCAC 15329067 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 13030 ||||| ||||||||| | || || | ||| || ||| || ||| | ||||| || Sbjct 15329066 AAACAACTCCACAAATTCGGATGCCGCACACGAGAAGAATGGCACGCCAGCCTCACCGGC 15329007 Query 13031 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | || | || | ||||||||||| ||||| || Sbjct 15329006 CACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGG 15328971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613469231573160