Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq9 167 4e-36 >seq9 Length=39018107 Score = 167 bits (184), Expect = 4e-36 Identities = 550/843 (65%), Gaps = 33/843 (4%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| |||| || || || ||||| | |||| ||||| Sbjct 26347615 CTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTT 26347674 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | |||||| || ||| | ||||| || | || | || ||| || || || || Sbjct 26347675 CGTCACGTCGTACACCTTGCCGCAGCCGAGCGCGCCGAGAAGCCGGTCGGCGACGAACTC 26347734 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCCG 159827 |||||| | |||| | || | ||| ||||| | ||| | |||| ||||| || Sbjct 26347735 GATGTACTGGCCCATCAGGTCGCTGTTCATCCCAACCAGGGCGCACGGC-AGCGCGTCGC 26347793 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 | | |||||| ||| || ||||| || || ||| ||| | || || || | | Sbjct 26347794 AGACGAACTCCCGCTCGATGTCGACGGCCTCCCGCACGATCCCCTTCACCCGCTCCTCGC 26347853 Query 159888 CCGGCTTG---CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTC 159944 ||||||| | || | || | |||||||| || ||||||||||| || | Sbjct 26347854 TCGGCTTGTTCCGCAGCAGCGAGT------AGAGGAGGCAGGCGAAGTCGCAGTGGAGGC 26347907 Query 159945 CCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTT 160004 ||||||| |||||||||| |||||| || | | |||| |||||||||| || ||| | Sbjct 26347908 CCTCGTCGCGAGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCCCGCTTCT 26347967 Query 160005 TGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAAAC 160063 ||||||| || |||| |||| |||| ||| || ||||||||||| ||| || || Sbjct 26347968 TGAGCCAGAAGATGG-CGCAGAAGCTGCCGGAGAAGAAGATCCCCTCAACGCAGGCGAAG 26348026 Query 160064 GCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 || | ||| | ||| | || || | | ||| | |||| | |||||| || Sbjct 26348027 GCGAGGAGGCGCTCCGCGAAGGACTCCCCGCCGTC---GATCCAGCGGAGGGCCCAGTCG 26348083 Query 160124 GCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTC 160183 ||||| |||| | ||| | | ||||||||| || | | ||||| ||| Sbjct 26348084 GCCTTGCGGGCGACGGCCGGGACGGTGTCGACGGCGCGGAAGAGGCGGTCCTTCTCGGCG 26348143 Query 160184 ACATCCTTGATCAGAGTAGCAATCAGCTTCGA----GTACATTTCTGCGTGCACATTTTC 160239 ||||||| |||| || | || |||||| || | ||| | || || Sbjct 26348144 GAGTCCTTGA----CGTAGGTCTCCAGTAGGAGGCTGTACATCTCGGAGTGGATGTTCTC 26348199 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCTCCTGTGTGA 160298 |||||| ||||| ||| |||||| |||||| ||| ||| ||||||| ||| Sbjct 26348200 GATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCCGAGA-GCTGGACCTCCTTCATGA 26348258 Query 160299 ACCTTTGAC--CCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 | | ||| | || || | || | ||||||| ||| || ||||| || | ||| Sbjct 26348259 AGC--GGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCAC 26348316 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416 ||| | || ||| || | |||| | | | |||| | | |||||||| | ||| || Sbjct 26348317 GTGGGTGACGAAGTGGCGCTCGCCGTCGGTGAGGCCC---TCCCAGTGGCGGAGGTCCTG 26348373 Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCA 160476 || | || ||||| || ||| |||| || |||| || |||||||| |||| Sbjct 26348374 GGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCCGCCTGCTTGTACATCTCCCA 26348433 Query 160477 GAT 160479 ||| Sbjct 26348434 GAT 26348436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795105989832560