Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02]
4,951 sequences; 691,429,809 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq6 104 2e-17
seq8 95.1 8e-15
seq1 82.4 5e-11
>seq6
Length=53892272
Score = 104 bits (114), Expect = 2e-17
Identities = 162/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || | || |||||| ||||| || | ||| ||||| || || |||||||| ||
Sbjct 13065370 GCCTCCCCTCAGACGCAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGC 13065429
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|| | | |||| || | |||||||| ||||||| | | ||||||||||| |||
Sbjct 13065430 CAGAGTCCTACCATCCTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGG 13065489
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCC 39669
| |||||| ||||| ||||| ||| || |||| | || || | ||| |||
Sbjct 13065490 AATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTGTCG--ATGGTATCAGAGCTCTCC 13065547
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||||||| ||||| || || || | || || || ||||| |||||
Sbjct 13065548 ACTTCCAAAGTGATTGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCAT 13065597
Score = 102 bits (112), Expect = 6e-17
Identities = 163/233 (70%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547
|||| || |||| |||||| || ||||| || | ||| ||| || || || |||||||
Sbjct 13059103 CATC-CCACCTCTCAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTATAAT 13059161
Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607
| |||||| |||| |||| || | || ||||| |||| || | | |||||| || |
Sbjct 13059162 CAGCCAAAGTGCGTCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTG 13059221
Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667
||| | || || ||||| || || ||||| | | | |||||||| |||||
Sbjct 13059222 GGGGGATTCCCTCCTTGTCTTGAATCTTGGCTTTAACATTGTCAATTGTGTCTGAGCTTT 13059281
Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
| || || | ||||| || || || || | || || || ||||||||||||
Sbjct 13059282 CAACCTCAAGTGTAATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATG 13059334
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563
||| || ||||| || | ||| || || || || |||||||||||||| || |
Sbjct 43309262 ACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCCAAGGTTCGGCC 43309203
Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623
||| |||| || || || |||| || | | |||||| |||| || | ||||| ||
Sbjct 43309202 ATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTT 43309143
Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683
||| |||||| ||| | | | |||||||| | ||||||||| || | || ||
Sbjct 43309142 GTCCTGGATTTTTGCTTTCACATTATCGACTGTGTCCGAGCTTTCCACCTCGAGGGTGAT 43309083
Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||| || || || | ||||| || ||||| |||||
Sbjct 43309082 TGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 43309047
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| |||| || ||| || |||||||| | ||| || || || || |||||||| ||
Sbjct 13065826 GCCACCTCTCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGGATGTTATAATCAGC 13065885
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
||| |||| |||| || | || ||||| |||| || | | |||||| || | |||
Sbjct 13065886 CAAGGTGCGTCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 13065945
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671
| || || || || || || |||| | | | |||||||| |||||| ||
Sbjct 13065946 GATTCCCTCCTTATCTTGAATCTTGGCCTTAACATTGTCAATTGTGTCTGAGCTTTCGAC 13066005
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
|| | ||||| || || || || | || || || ||||||||||||
Sbjct 13066006 CTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 13066054
>seq8
Length=74329289
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
|||||| |||| ||| || || || |||| ||| ||||| || || |||||||||||
Sbjct 36267192 GCCGCCGCGCAGACGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAATGTTATAATCGGC 36267133
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|| | |||| |||| ||| |||||| ||||||| | | |||||| |||| ||
Sbjct 36267132 CAGTGTCCTCCCATCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGG 36267073
Query 39612 TACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669
| ||| || || || | || || | || |||| | ||||||| ||||||
Sbjct 36267072 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCG--ATGGTGTCTGAACTTTCC 36267015
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || | ||| || || ||||| || | ||| || || || ||||||||
Sbjct 36267014 ACCTCAAGAGTGATGGTCTTACCGGTCAGAGTCTTGACAAAAATCTGCAT 36266965
>seq1
Length=40297282
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 39490 TCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCG 39549
||||| || || | ||||| || | |||| || || || || ||||| ||||||
Sbjct 18089003 TCGCCACCGCGGAGGCGCAGAACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAATCG 18088944
Query 39550 GCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAG 39609
|| | |||||| || |||| || |||||| | || || | |||||||||||||
Sbjct 18088943 GCGAGGGTGCGTTCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGATCCGGC 18088884
Query 39610 GGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTC 39668
|| | ||| || || || | | | |||| | ||| | | | ||||| | ||| ||
Sbjct 18088883 GGGATGCCCTCCTTATC-CTGAATCTTTGCCTTCACGTTGTCGATCGTGTCCGAGCTCTC 18088825
Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||| |||| || || || || || || | || || |||||||||||||||
Sbjct 18088824 CACCTCCAGCGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAGATCTGCATG 18088773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347348639609783
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |