Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq8 95.1 8e-15 seq1 82.4 5e-11 >seq6 Length=53892272 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | || |||||| ||||| || | ||| ||||| || || |||||||| || Sbjct 13065370 GCCTCCCCTCAGACGCAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGC 13065429 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | | |||| || | |||||||| ||||||| | | ||||||||||| ||| Sbjct 13065430 CAGAGTCCTACCATCCTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGG 13065489 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||| ||||| ||||| ||| || |||| | || || | ||| ||| Sbjct 13065490 AATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTGTCG--ATGGTATCAGAGCTCTCC 13065547 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| ||||| || || || | || || || ||||| ||||| Sbjct 13065548 ACTTCCAAAGTGATTGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCAT 13065597 Score = 102 bits (112), Expect = 6e-17 Identities = 163/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| |||||| || ||||| || | ||| ||| || || || ||||||| Sbjct 13059103 CATC-CCACCTCTCAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTATAAT 13059161 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||||| |||| |||| || | || ||||| |||| || | | |||||| || | Sbjct 13059162 CAGCCAAAGTGCGTCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTG 13059221 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | || || ||||| || || ||||| | | | |||||||| ||||| Sbjct 13059222 GGGGGATTCCCTCCTTGTCTTGAATCTTGGCTTTAACATTGTCAATTGTGTCTGAGCTTT 13059281 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || || | ||||| || || || || | || || || |||||||||||| Sbjct 13059282 CAACCTCAAGTGTAATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATG 13059334 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39504 ACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTC 39563 ||| || ||||| || | ||| || || || || |||||||||||||| || | Sbjct 43309262 ACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCCAAGGTTCGGCC 43309203 Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| |||| || || || |||| || | | |||||| |||| || | ||||| || Sbjct 43309202 ATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTT 43309143 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 ||| |||||| ||| | | | |||||||| | ||||||||| || | || || Sbjct 43309142 GTCCTGGATTTTTGCTTTCACATTATCGACTGTGTCCGAGCTTTCCACCTCGAGGGTGAT 43309083 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || || || | ||||| || ||||| ||||| Sbjct 43309082 TGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 43309047 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || ||| || |||||||| | ||| || || || || |||||||| || Sbjct 13065826 GCCACCTCTCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGGATGTTATAATCAGC 13065885 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| |||| |||| || | || ||||| |||| || | | |||||| || | ||| Sbjct 13065886 CAAGGTGCGTCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGG 13065945 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | || || || || || || |||| | | | |||||||| |||||| || Sbjct 13065946 GATTCCCTCCTTATCTTGAATCTTGGCCTTAACATTGTCAATTGTGTCTGAGCTTTCGAC 13066005 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | ||||| || || || || | || || || |||||||||||| Sbjct 13066006 CTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATG 13066054 >seq8 Length=74329289 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 |||||| |||| ||| || || || |||| ||| ||||| || || ||||||||||| Sbjct 36267192 GCCGCCGCGCAGACGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAATGTTATAATCGGC 36267133 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || | |||| |||| ||| |||||| ||||||| | | |||||| |||| || Sbjct 36267132 CAGTGTCCTCCCATCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGG 36267073 Query 39612 TACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||| || || || | || || | || |||| | ||||||| |||||| Sbjct 36267072 GATGCCCTCCTTATCCTGGATCTTCGCCTTCACATTGTCG--ATGGTGTCTGAACTTTCC 36267015 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | ||| || || ||||| || | ||| || || || |||||||| Sbjct 36267014 ACCTCAAGAGTGATGGTCTTACCGGTCAGAGTCTTGACAAAAATCTGCAT 36266965 >seq1 Length=40297282 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39490 TCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCG 39549 ||||| || || | ||||| || | |||| || || || || ||||| |||||| Sbjct 18089003 TCGCCACCGCGGAGGCGCAGAACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAATCG 18088944 Query 39550 GCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAG 39609 || | |||||| || |||| || |||||| | || || | ||||||||||||| Sbjct 18088943 GCGAGGGTGCGTTCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGATCCGGC 18088884 Query 39610 GGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTC 39668 || | ||| || || || | | | |||| | ||| | | | ||||| | ||| || Sbjct 18088883 GGGATGCCCTCCTTATC-CTGAATCTTTGCCTTCACGTTGTCGATCGTGTCCGAGCTCTC 18088825 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||| |||| || || || || || || | || || ||||||||||||||| Sbjct 18088824 CACCTCCAGCGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAGATCTGCATG 18088773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347348639609783