Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq8 129 2e-24 seq7 118 4e-21 seq10 109 2e-18 seq6 109 2e-18 seq5 95.1 5e-14 seq9 93.3 2e-13 >seq8 Length=74329289 Score = 129 bits (142), Expect = 2e-24 Identities = 164/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || || ||||| || || || ||| | || ||||| || Sbjct 36266508 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 36266567 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | |||||| | | ||| |||||||| || |||||||| ||||| || ||||| Sbjct 36266568 CGACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 36266627 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || || | |||||||||||||| ||||| || |||||||||||||| || Sbjct 36266628 GCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACAA 36266687 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| | || |||||||| || | ||||||| ||| Sbjct 36266688 CATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGACTGAGGGGA 36266733 Score = 116 bits (128), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || ||||| || || ||||| || || |||||| || Sbjct 36266053 ATGCAGATATTTGTGAAGACCCTCACTGGCAAGACGATTACCCTAGAGGTTGAAAGTTCG 36266112 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || ||||| || || |||||||||||||| || ||||| Sbjct 36266113 GACACCATCGATAATGTAAAGGCGAAAATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 36266172 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | || |||||| | || || |||||||| ||||| ||||| ||||||| || || Sbjct 36266173 CAGAGGTTGATTTTCGCGGGCAAGCAACTTGAGGATGGCCGAACTCTGGCGGACTACAAC 36266232 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| ||||||| ||||| || Sbjct 36266233 ATCCAGAAGGAATCAACACTCCACTTGGT 36266261 >seq7 Length=52445601 Score = 118 bits (130), Expect = 4e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||| ||| | ||||| | |||||||| ||||| |||||||| ||||| || ||||| Sbjct 3746026 AGTAACTAAAGCAGTGGTCACTGTTCCTGCTTACTTCAATGACTCACAAAGGACCGCAAC 3745967 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 || ||||| |||| ||||||||| ||| | || ||||| ||||||||||||||||| || Sbjct 3745966 AAAGGATGCTGGACGTATTGCTGGCTTAGAAGTGCTTCGCATTATTAATGAACCTACTGC 3745907 Query 451432 AGCTGCTCTAGCATATGG 451449 || | || |||||||| Sbjct 3745906 TGCATCGCTGGCATATGG 3745889 Score = 87.8 bits (96), Expect = 7e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || ||||||||||| || |||||||||||||| || | || ||||| |||||||| Sbjct 18101526 GCTGTTATTACTGTTCCAGCCTATTTCAATGATGCTCAGAGACAGGCAACAAAAGATGCT 18101585 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || ||||| || | |||| |||| || ||||| || || ||||||||||| Sbjct 18101586 GGGAGGATTGCAGGGCTTGATGTAGAAAGAATCATCAATGAGCCCACTGCAGCTGCTCTT 18101645 Query 451442 GCATATGG 451449 ||||||| Sbjct 18101646 TCATATGG 18101653 >seq10 Length=39358841 Score = 109 bits (120), Expect = 2e-18 Identities = 250/375 (67%), Gaps = 11/375 (3%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 |||||| |||| |||||||| || ||||||||||| || ||| || | || || Sbjct 508211 TTTGCTGCTGAGGAAATTTCCTCCATGGTTCTTACAAAGATGCGTGAGATTGCCGAGGCC 508270 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 || | || || | ||| ||||||| | ||||| || || || |||||||| | Sbjct 508271 TACCTGGGCTCGACTATTAAAAATGCAGTTGTCACTGTCCCTGCCTACTTCAATGACTCT 508330 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || |||| || || || ||||| || ||||| || | ||||| | || || ||| Sbjct 508331 CAGAGGCAGGCCACCAAGGATGCCGGTGTCATTGCAGGGCTCAATGTCATGCGTATCATT 508390 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAG--AAACA---- 451471 ||||| || || || || || | || ||||| || | || | ||| | || Sbjct 508391 AATGAGCCAACTGCTGCGGCCATTGCTTATGGTCTCG----ATAAGAAGGCCACCAGTGT 508446 Query 451472 -GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACT 451530 | ||| || ||| | || | || || ||||||| || ||| |||| || | || Sbjct 508447 GGGAGAGAAGAATGTGTTGATCTTCGACCTTGGTGGTGGTACTTTTGATGTGTCCCTCCT 508506 Query 451531 TTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGG 451590 | ||||| || || | ||||| || |||||||| ||| || |||||||| || || Sbjct 508507 AACCATTGAGGAGGGTATCTTTGAGGTGAAGGCAACAGCTGGAGACACTCATCTTGGTGG 508566 Query 451591 TGAAGATATTGATAA 451605 ||| || ||||||| Sbjct 508567 TGAGGACTTTGATAA 508581 >seq6 Length=53892272 Score = 109 bits (120), Expect = 2e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || || ||||| || || ||||||||||| || ||| || Sbjct 43309730 AATGCAGATTTTCGTGAAGACTCTCACTGGGAAGACGATTACTCTTGAGGTCGAAAGCTC 43309789 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| | || | | || |||||||| || || || || |||||||| || || Sbjct 43309790 TGATACTGTCGACAATGTGAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCGGACCA 43309849 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || || | || ||||||||||||||||| || || ||||| || || || Sbjct 43309850 GCAAAGGCTGATCTTTGCTGGTAAACAACTTGAAGATGGCAGGACATTGGCCGACTACAA 43309909 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 43309910 CATCCAAAAGGAATCGACCCTTCAC 43309934 Score = 102 bits (112), Expect = 3e-16 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || ||||| || || ||||| ||||| || ||| || Sbjct 13066053 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATTACCCTTGAGGTCGAAAGCTCA 13065994 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | |||| || |||||||||||||| ||||| || || || || Sbjct 13065993 GACACAATTGACAATGTTAAGGCCAAGATTCAAGATAAGGAGGGAATCCCCCCAGACCAG 13065934 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | ||||| || ||||| |||||| | || ||||| |||||||| Sbjct 13065933 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGACGCACCTTGGCTGATTATAAC 13065874 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | ||||| || || || | | |||||||| Sbjct 13065873 ATCCAGAAGGAGTCCACACTCCATTTGGTGCTTCGTCTGAGAGG 13065830 Score = 100 bits (110), Expect = 1e-15 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || ||||| || || ||||||||||| || || ||| Sbjct 13065825 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATTACTCTTGAGGTGGAGAGTTCT 13065766 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || |||||||| || || ||||| ||||| || || || Sbjct 13065765 GATACCATTGACAATGTGAAGGCCAAAATTCAGGACAAAGAAGGGATTCCCCCAGACCAG 13065706 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || || || | || || |||||||| ||||| | || | || || || || Sbjct 13065705 CAGCGGTTGATCTTTGCTGGCAAGCAACTTGAGGATGGCCGGACGCTTGCAGACTACAAC 13065646 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGATAAATACA 391282 || | ||||| | || |||||||| || || | |||||||| ||| || Sbjct 13065645 ATCCAGAAGGAATCCACCCTTCACTTGGTCCTACGTTTGAGAGGAGGAATGCA 13065593 Score = 93.3 bits (102), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || || || || || || || ||||| || | || || || ||| Sbjct 13065369 ATGCAGATTTTTGTGAAGACCCTTACCGGCAAGACTATCACCTTGGAAGTGGAGAGTTCT 13065310 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | ||| || || || || |||||||||||||| || || || Sbjct 13065309 GACACGATTGATAACGTCAAAGCGAAGATACAGGACAAGGAAGGAATTCCCCCAGACCAG 13065250 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || |||||| ||||||| ||||| || ||||| || | | |||| ||||| || Sbjct 13065249 CAGCGGTTGATTTTCGCAGGGAAGCAACTCGAGGATGGTAGGAGTCTGGCCGATTACAAC 13065190 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 13065189 ATTCAAAAGGA 13065179 >seq5 Length=74729908 Score = 95.1 bits (104), Expect = 5e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 248785 GCTAGAATTTTCATTGGTCCTATGTTTTATTTGAGACTTAAACATATGGTACTTGATAAA 248844 |||| |||||| | ||||| | | |||| |||||| || || ||||| |||||| Sbjct 56196919 GCTATGATTTTCCTGGGTCCAACATATTATCAGAGACTCAAGCACATGGTGGATGATAAG 56196978 Query 248845 GTTCATTCCAGAAGTATGGGTCCTAGACAAGCTATTACTAGACAACCCATGGAAGGACGT 248904 | |||||| | || ||||||| ||| | |||| || || || || ||||| Sbjct 56196979 ATCCATTCCCGTGGTCGGGGTCCTGTGCAAATTCTTACAAGGCAGCCTGCCGAGGGACGA 56197038 Query 248905 TCTAAAGATGGAGGTCTTAAAATTGGAGAGATGGAAAAAGATGCAATGGTTGCTCATGGA 248964 ||| |||||| ||||| | ||||||||||||||| |||| ||| ||||||||||| Sbjct 56197039 TCTCGAGATGGTGGTCTCCGATTTGGAGAGATGGAAAGAGATTGCATGATTGCTCATGGA 56197098 Score = 91.5 bits (100), Expect = 6e-13 Identities = 179/260 (69%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 451340 GCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTA 451399 || || ||||||||||| ||| ||||||| || || || || || |||||||| | Sbjct 10809661 GCCTACTTCAATGATGCCCAAAGGCAAGCTACCAAGGACGCTGGTGTAATTGCTGGACTG 10809720 Query 451400 AATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 |||||| | ||||||| |||||||| || || ||||| | || ||||| || ||| Sbjct 10809721 AATGTTGCTAGAATTATCAATGAACCCACTGCTGCTGCCATTGCGTATGG-CTTGGA--- 10809776 Query 451460 TCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGAT 451519 ||| | || | || || || || | || ||||| | ||||| |||| ||| Sbjct 10809777 -CAAGA-AAGGTGGTGAGAAGAACATCCTTGTTTTTGACCTAGGTGGTGGAA--CATTCG 10809832 Query 451520 ACTTCTG--TACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATA 451577 | || | | || ||||||| |||| || ||||| || || || ||||| |||| Sbjct 10809833 ATGTCAGCATCCTGACAATTGACAATGGTGTCTTTGAGGTCCTTGCCACAAATGGCGATA 10809892 Query 451578 CTCATCTAGGAGGTGAAGAT 451597 | || | |||||||| ||| Sbjct 10809893 CCCACTTGGGAGGTGAGGAT 10809912 Score = 89.7 bits (98), Expect = 2e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 || || || |||||||| || |||| || ||||| ||||| ||| | ||||| |||| Sbjct 10808991 ATCGGCATCGATCTTGGCACAACCTACTCGTGTGTTGGTGTCTACAAGAATGGTCATGTT 10809050 Query 450977 GAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGT 451023 |||||||||||||||||||||||| || | ||||| || ||||| Sbjct 10809051 GAAATTATAGCAAATGACCAAGGAAACCGTATCACTCCATCGTGGGT 10809097 >seq9 Length=39018107 Score = 93.3 bits (102), Expect = 2e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| | |||||||| ||||| ||||||||| | || || ||| ||||| ||||| Sbjct 38689787 GCAGTTGTGACTGTTCCGGCTTACTTCAATGATTCGCAGAGGACAGCTACTAAGGATGCC 38689728 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | ||||||||| || | |||||||| || || ||||||||||| || || | | Sbjct 38689727 GGTCGTATTGCTGGCTTGGAAGTTCTTCGCATAATCAATGAACCTACCGCTGCATCCTTG 38689668 Query 451442 GCATATGGA 451450 || |||||| Sbjct 38689667 GCTTATGGA 38689659 Score = 87.8 bits (96), Expect = 7e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||||| || || |||||||||||||| || ||| | || |||| | | || Sbjct 37127179 GTTCTAACAAAGATGAAAGAAACAGCTGAGGCTTATTTGGGGAAGACAGTGTCGAAAGCT 37127120 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || || || ||||| ||||| ||||||||||| || | || ||||| |||||||| || Sbjct 37127119 GTTATCACAGTTCCAGCTTACTTCAATGATGCCCAGAGACAGGCAACCAAAGATGCTGGC 37127060 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 ||| | || | | || | ||||||| ||||| || || |||||||| ||| | Sbjct 37127059 AGAATTTCAGGCCTCGACGTGCAGAGAATTATAAATGAGCCAACTGCAGCTGCACTATCT 37127000 Query 451445 TATGGA 451450 |||||| Sbjct 37126999 TATGGA 37126994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975593070920708