Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq10 165 6e-35 seq7 105 5e-17 seq5 98.7 8e-15 >seq10 Length=39358841 Score = 165 bits (182), Expect = 6e-35 Identities = 605/926 (65%), Gaps = 36/926 (4%) Strand=Plus/Minus Query 517391 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 ||||||||| ||| |||||| ||| ||| ||| || || || || || | || ||| Sbjct 457808 TCACCCTCGTAAACCTGGATAAGGACTCCAGGTTGGTTGTCCGAGTAGGTGGAGAACACT 457749 Query 517451 CTGGATTTTTTACAAGGAATTGTTGTGTTTCT----ATCAATAATATTGGTCATAATACC 517506 || || || || || |||||||| ||||| | ||||| | ||| Sbjct 457748 TGTTCCTTCTTGGTGGGGATAGTGGTGTTTCTTGGGATCAACACA----GTCATGACACC 457693 Query 517507 ACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT--TGA 517564 || || ||||| | ||||||||| || || |||||||| | | |||||| | || Sbjct 457692 TCCCGCAGTTTCCAGACCAAGAGAGAGGGGTGTGACATCCAGCA--ACAATAGATCCTGG 457635 Query 517565 AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 517624 | || |||| | ||| | ||| || ||||||| || || ||||| || ||| Sbjct 457634 ACCTTCTCATTGCCCTCGCCACTCAAAATTGCAGCTTGAACGGCTGCGCCATAAGCCACA 457575 Query 517625 GCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGA 517681 ||||||||||| || | | || || || | || || ||||| |||| || || | Sbjct 457574 GCTTCATCAGGGTTGATGCTCTTGCAG--AGCTCCTTCCCGTTGAAGAAATCCTGCAATA 457517 Query 517682 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 | || ||||| || || | || || || || || | |||| || || || || Sbjct 457516 -GCTGCTGCACCTTGGGGATCCTAGTGGAACCACCCACAAGGACAACATCGTGGACA-GT 457459 Query 517742 GAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAA 517800 | | || |||| |||| |||| | | || ||||| || || | || | || || Sbjct 457458 GCTCTTGTCCATCTTTGCATCCCTGAGACACTTCTCAACTGGCTCCATACACTTCCTGAA 457399 Query 517801 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTC 517859 | ||| | || || |||||| | || | || | || | | || || || | | Sbjct 457398 GAGGTCCATATTGAGCTCCTCGAATCTGGCACGGGTGATTGT-AGAGTAGAAATCCACAC 457340 Query 517860 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGTGCACGTT 517916 | || |||||||||||| ||| ||||| || || ||| || || || ||| | | || Sbjct 457339 CCTCATACAAAGAATCAATTTCGATCGTTGTCTGGGCAGTGGAGGA-GAGAGTTCTCTTT 457281 Query 517917 TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTTTGCTGATTGATTCAAATCT 517975 || | |||||| |||||||| | ||| | |||| || | | | ||| | ||| Sbjct 457280 --GCCCTTTCACAAGCTGTCCTCAATCTCC-TAAGAGCCCTCGGGTTTCCATTGATATCC 457224 Query 517976 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCT 518035 | || | ||||||||||| |||| |||| | | || | | ||||| || || Sbjct 457223 TTCTTGTGCTTTCTCTTGAACTCTTGAACAAAGTGGTTCACCATTCTGTTATCGAAGTCC 457164 Query 518036 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 518095 ||||| || | | ||||| ||| | || || | || | ||| | || ||||||| | Sbjct 457163 TCACCGCCAAGATGAGTATCTCCAGCTGTTGCCTTCACCTCGAAGATACCCTCTTCAATA 457104 Query 518096 GACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 518155 | | || | ||||| || |||||||| | ||||||||| | |||||| | ||| Sbjct 457103 GTTAGGAGGGACACATCGAATGTACCACCACCAAGATCAAAAATCAACACATTCTTCTCT 457044 Query 518156 TTGT--CT--TGGTTTT--TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 || ||| ||| | ||||||||||| || | || |||||||| || ||||| Sbjct 457043 CCCGAGCTGGTGGCTTTCTTGTCAAGACCATAAGCGATGGCCGCAGCAGTCGGCTCATTG 456984 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 || || | || ||||| || |||||||| || ||||| || ||||| || || || Sbjct 456983 ATGATACGCATGACATTGAGGCCAGCAATGACACCGGCATCCTTGGTGGCCTGCCTCTGA 456924 Query 518270 GAATCGTTAAAATATGCAGGAACAGT 518295 || || ||||| || ||||| || || Sbjct 456923 GAGTCATTAAAGTAGGCAGGGACGGT 456898 Score = 136 bits (150), Expect = 3e-26 Identities = 596/931 (64%), Gaps = 24/931 (3%) Strand=Plus/Minus Query 517391 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 ||||||||| ||| |||||| ||| ||| ||| ||||| || || || | || || Sbjct 509214 TCACCCTCGTAAACCTGGATAAGGACTCCAGGTTGGTTATCCGAGTAGGTAGAGAACAC- 509156 Query 517451 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCT----ATCAATAATATTGGTCATAATAC 517505 ||| || || || || || |||||||| ||||| | ||||| | || Sbjct 509155 CTGCTCCTTCTTGGTGGGGATGGTGGTGTTTCTTGGGATCAAGACA----GTCATGACAC 509100 Query 517506 CACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA 517565 | || || ||||| ||||| |||| || || |||||||| | || | | | || | Sbjct 509099 CTCCAGCGGTTTCCAAACCTTGAGAGAGGGGGGTGACATCCAGCAGCAACAAGTCCTGGA 509040 Query 517566 GTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAG 517625 || |||| | | |||| | ||| || ||||||| || |||||||| || |||| Sbjct 509039 CCTTCTCATTACCCTCACCACTCAAAATTGCAGCTTGAACCGCCGCACCATAAGCCACAG 508980 Query 517626 CTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAA 517682 |||||||||| |||| | || || || | || || ||||| |||| || || | Sbjct 508979 CTTCATCAGGGTTAATGCTCTTGCAG--AGCTCCTTCCCGTTGAAGAAATCCTGCAATA- 508923 Query 517683 GTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 517742 | || ||||| || || | || || || || || | |||| || || | ||| Sbjct 508922 GCTGCTGCACCTTGGGGATCCTAGTGGAACCACCCACAAGGACAACATCGTGGATA-GTG 508864 Query 517743 AT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC 517801 | || |||| |||| |||| | || ||||| || || | || | || || Sbjct 508863 CTCTTGTCCATCTTTGCATCCCTGAGGCACTTCTCAACTGGCTCCATACACTTCCTGAAA 508804 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 517861 | ||| || || || ||| | || | ||| | ||| | |||| | || Sbjct 508803 AGGTCCATGTTGAGCTCCTCAAATCTGGCACGAGTGATTGTGGAGTAGAAATCCACACCC 508744 Query 517862 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 517921 ||| ||| ||| |||| ||| || || || |||| | || || || | | || || Sbjct 508743 TCGTACAGAGAGTCAATTTCGATTGTCGTCTGAGCAGTGGAGGAGAGAGTTCTCTTCGCC 508684 Query 517922 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTTA 517981 | |||||| |||||||| | ||| | || || | | | | | | || | || Sbjct 508683 CTTTCACAAGCTGTCCTCAATCTCCTTAGAGCCCTCGGGTTTCCACTGATGTCCTTCTTG 508624 Query 517982 TATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCT 518041 | || |||||||| |||| ||| | | || | | |||||||| || ||||| Sbjct 508623 TGCTTCCTCTTGAACTCTTGCACAAAGTGGTTCACCATTCTGTTATCAAAGTCCTCACCA 508564 Query 518042 CCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAA 518101 || | | ||| | ||| | || || | || | || | || || |||| | | Sbjct 508563 CCAAGATGAGTGTCTCCAGCTGTTGCCTTCACCTCAAAGATACCCTCCTCAATGGTTAGG 508504 Query 518102 AGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT 518161 || | |||||| || |||||||| | || || || | |||||| | ||| | Sbjct 508503 AGGGACACATCAAAAGTACCACCACCAAGGTCGAAGATCAACACATTCTTCTCTCCCACA 508444 Query 518162 ----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||| || ||||| |||||||| |||| || ||||||||||| |||||||| || Sbjct 508443 CTGGTGGCCTTCTTATCGAGACCATAAGCAATGGCCGCAGCAGTTGGCTCATTAATGATA 508384 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | || ||||| || || ||||| || ||||| || ||||| || || || || || Sbjct 508383 CGCATGACATTGAGCCCTGCAATGACACCGGCATCCTTGGTGGCCTGCCTCTGAGAGTCA 508324 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || ||||| ||||| | ||| |||| Sbjct 508323 TTGAAGTAGGCAGGGACAGTGACAACTGCAT 508293 >seq7 Length=52445601 Score = 105 bits (116), Expect = 5e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235 |||||| | || |||||| ||||| || ||||| || ||||| |||| ||| || || Sbjct 18101654 ACCATATGAAAGAGCAGCTGCAGTGGGCTCATTGATGATTCTTTCTACATCAAGCCCTGC 18101595 Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 ||| || || |||||||| || || ||||| || | ||| || ||||| || |||||||| Sbjct 18101594 AATCCTCCCAGCATCTTTTGTTGCCTGTCTCTGAGCATCATTGAAATAGGCTGGAACAGT 18101535 Query 518296 AATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACT 518355 |||||| || | | | | ||| || | |||||| || |||| | |||| || Sbjct 18101534 AATAACAGCTTTTGAAATTGATTTCCCCAAATAAGCCTCGGCAGTTTCTCTCATCTTCTG 18101475 Query 518356 TAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCT 518393 | || | | |||||| |||||||||||||| Sbjct 18101474 GAGGATGAAAGCACCAATTTGACTTGGGGAATATTGCT 18101437 Score = 100 bits (110), Expect = 2e-15 Identities = 231/345 (67%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 517216 AGTAATAGTAATATTCTTGGATTTGTTT---GTTGATTTATCAGCGGCAGTCACATTAAG 517272 ||||||||| |||| |||| || ||| ||| |||||| | ||||| ||| || Sbjct 3744231 AGTAATAGTGATAT-CTTGC--TTCTTTCCAGTTCCTTTATCCACAGCAGTAACAGAGAG 3744287 Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 ||| ||||||||||| | |||||| |||| |||||||||||||| |||| |||| || Sbjct 3744288 AATTCCATTGGCATCGATATCAAACTTGACCTCAATTTGAGGGACACCTCGAGGAGCTGG 3744347 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 |||||| || || | || | || ||| |||||||| || || | | || Sbjct 3744348 TGGGATACCATCAAGGCGGAAGCTGCCGAGAGATTTATTATCCCTAACAAACTCCCTCTC 3744407 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 517452 || | || | | || || ||||||| ||| | ||| | || ||| Sbjct 3744408 CCCTTGGAGGACATTAATCTCGACGCTAGTTTGACCATCAGCTGCAGTAGAGAAAACTTC 3744467 Query 517453 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 ||||| | || | |||||||| || ||| || |||||||| | |||||| Sbjct 3744468 TGATTTAGAAGTCGGGAGAGTTGTGTTCCTTGGAATGATCTTGGTCATGACACCACCCAG 3744527 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| || ||||||||||| || || || ||||| | || ||||| Sbjct 3744528 TGTCTCCAAACCAAGAGATAGTGGTGTCACATCTAAAAGAACAAT 3744572 Score = 95.1 bits (104), Expect = 9e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 322243 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 322302 ||| |||| |||||| |||||||| || ||||| || ||| | ||||| | || || Sbjct 18101654 ACCATATGAAAGAGCAGCTGCAGTGGGCTCATTGATGATTCTTTCTACATCAAGCCCTGC 18101595 Query 322303 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 322362 ||| | ||| ||| ||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct 18101594 AATCCTCCCAGCATCTTTTGTTGCCTGTCTCTGAGCATCATTGAAATAGGCTGGAACAGT 18101535 Query 322363 AATAACTGCTTT 322374 |||||| ||||| Sbjct 18101534 AATAACAGCTTT 18101523 Score = 87.8 bits (96), Expect = 1e-11 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || |||| ||||| || | | |||||||| |||||||||||||| | | || Sbjct 3745877 TTCTTTTCAAACCCATATGCCAGCGATGCAGCAGTAGGTTCATTAATAATGCGAAGCACT 3745936 Query 518225 T-TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 | |||| |||||||| | ||| ||||| || || || |||||||| || || || || Sbjct 3745937 TCTAAG-CCAGCAATACGTCCAGCATCCTTTGTTGCGGTCCTTTGTGAGTCATTGAAGTA 3745995 Query 518284 TGCAGGAACAGTAATAACGGCATCAGTTACTT 518315 ||||||||||| | || || | |||||||| Sbjct 3745996 AGCAGGAACAGTGACCACTGCTTTAGTTACTT 3746027 >seq5 Length=74729908 Score = 98.7 bits (108), Expect = 8e-15 Identities = 125/170 (74%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 ||||||||||| | ||||||| ||| | ||| | || ||| || | |||| Sbjct 10809827 GTTCCACCACCTAGGTCAAAAACAAGGATGTTCTTCTCACCACCTTTCTTGTC--CAAG- 10809771 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 |||||||||| ||||||||||| |||||||| |||||||| |||||| || |||||| Sbjct 10809770 CCATACGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTAGCAACATTCAGTCCAGCA 10809711 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 ||| || || || || || ||||| ||||| | ||| || || || || Sbjct 10809710 ATTACACCAGCGTCCTTGGTAGCTTGCCTTTGGGCATCATTGAAGTAGGC 10809661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780576715071406