Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq9 149 8e-31 seq6 113 6e-20 seq1 109 7e-19 >seq9 Length=39018107 Score = 149 bits (164), Expect = 8e-31 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| |||| || || || |||||||| ||||||||||| || | Sbjct 26348049 TCCTTCGCGGAGCGCCTCCTCGCCTTCGCCTGCGTTGAGGGGATCTTCTTCTCCGGCAGC 26347990 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||||||||||| || |||||||| || ||| |||||| ||| Sbjct 26347989 TTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGGCTCACCTTCTCGAAC 26347930 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| |||||||| |||||||| |||||| Sbjct 26347929 GAGCTCATCTCTCGCGACGAGGGCCTCCAC 26347900 >seq6 Length=53892272 Score = 113 bits (124), Expect = 6e-20 Identities = 271/408 (66%), Gaps = 4/408 (1%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| ||||| || |||||||| || | ||||||||| || Sbjct 15329246 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 15329187 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | |||||| | | ||| | ||||| ||||| ||||||||||| || || ||||| Sbjct 15329186 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAATAAACACAATGCA 15329127 Query 16094 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 ||| ||||| || || ||||| | |||| || | | || || ||||| Sbjct 15329126 AGGT--GCTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCACCAACACCC 15329069 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 16211 ||||||| ||||||||| | | || | ||| || ||| || || || ||||| Sbjct 15329068 ACAAACAACTCCACAAATTCGGATGCCGCACACGAGAAGAATGGCACGCCAGCCTCACCG 15329009 Query 16212 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 16271 || | || | || | ||| ||||| || || || || ||| | || || |||| Sbjct 15329008 GCCACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGGAGGACCGACAAGAAGACAACCT 15328949 Query 16272 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATC 16331 || || || || || | ||| | ||||| | ||| | ||||| || | | Sbjct 15328948 TTGGGGATTTTAGCCCCCAAAGCGGTGTACTTATCAGGGTTCTTCAAGAAATCAACCACC 15328889 Query 16332 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAAC 16379 |||| |||||| |||||| ||| ||| | ||||||| |||| Sbjct 15328888 TCTTGCAATTCCAATTTGGCTTGATCAGCCCCAGCTACATCGGCAAAC 15328841 >seq1 Length=40297282 Score = 109 bits (120), Expect = 7e-19 Identities = 300/449 (67%), Gaps = 18/449 (4%) Strand=Plus/Plus Query 15933 CGATTCGTTGCGGCGATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTG 15990 || || ||||| || | |||| ||||| || ||| || ||||||||||||| |||| Sbjct 29952399 CGGTTAGTTGCTGCAACAACAATGATACCCGTATTTCCTT--CAAAACCATCCATTTCTG 29952456 Query 15991 TCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 16048 |||| ||||| |||| || || |||| ||||||||| || | | | | |||| | Sbjct 29952457 TCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTTCC 29952514 Query 16049 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GC 16107 | ||| ||||| |||||||| ||||||| || || ||||| || ||| || Sbjct 29952515 TCTCTGCCGGCCCACAGCATCAATTTCATCAACAAACACAATGCAGGGAGCATTCTCTTT 29952574 Query 16108 GAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAA 16167 | | ||| ||| ||||| || || | || || ||||||||||||||||| || | Sbjct 29952575 GGCCTTCTTGAAA-AGATCGCGAACTCTAGAAGCACCAACACCAACAAACATCTCTACGA 29952633 Query 16168 AGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCG 16226 | | | | ||| || | || || || ||| | |||||| ||||| || || Sbjct 29952634 ACTCAGAACCTGAA-ATGGAGAAAAATGGAACACCTGCTTCACCAGCAATTGCCTTTGCA 29952692 Query 16227 AGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCG 16286 || || || || || || ||||| ||| | || ||| |||| || || || Sbjct 29952693 AGCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCTTAGGGATACGAGCC 29952752 Query 16287 CCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCC---AATTCA 16343 ||| || || | |||||||||| ||| ||||| ||||| | ||||| || || Sbjct 29952753 CCAATTGCAGTAAACCTCTCAGGTTTCTTTAGAAACTCCAC---CACTTCCATGAAGTCC 29952809 Query 16344 TCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | ||||| | |||| || ||||||| Sbjct 29952810 TGCTTGGCCTCATCAACACCAGCAACATC 29952838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620703983804720