Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq9 109 6e-19 seq5 82.4 9e-11 >seq9 Length=39018107 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || |||||||||||||| || |||| || || |||||||| || Sbjct 26347901 TGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCC 26347960 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || || |||||||| ||||| || ||| Sbjct 26347961 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCAACGCAG 26348020 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGAC-TTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| || ||||| || |||| | | ||||| ||| ||| ||||| Sbjct 26348021 GCGAAGGCGAGGAGGCGCTCCGC-GAAGGACTCCCCGCCGTCGATCCAGCGGAGGGCCCA 26348079 Query 119687 GTTGGCCTTACG 119698 || |||||| || Sbjct 26348080 GTCGGCCTTGCG 26348091 >seq5 Length=74729908 Score = 82.4 bits (90), Expect = 9e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| Sbjct 42823190 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 42823249 Query 136777 GGGAACAGCTTTTAGATATATTTTT 136801 |||| || ||||| ||| |||||| Sbjct 42823250 GGGACCACCTTTTTTATA-ATTTTT 42823273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588939549747800