Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq9 113 5e-20 seq6 100 3e-16 >seq1 Length=40297282 Score = 123 bits (136), Expect = 3e-23 Identities = 301/448 (67%), Gaps = 16/448 (4%) Strand=Plus/Plus Query 9240 CGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTG 9297 || || || || || | |||| ||||| || ||| || ||||||||||||| |||| Sbjct 29952399 CGGTTAGTTGCTGCAACAACAATGATACCCGTATTTCCTT--CAAAACCATCCATTTCTG 29952456 Query 9298 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 9355 |||| || || |||| || || |||| ||||||||| || | | | | |||| | Sbjct 29952457 TCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTTCC 29952514 Query 9356 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 9415 | ||| ||||| |||||||| ||||||| || ||||| || || ||| || Sbjct 29952515 TCTCTGCCGGCCCACAGCATCAATTTCATCAACAAACACAATGCAGGGAGCATTCTCTTT 29952574 Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||| | | || ||||||||||| || || || ||||||||||||||||| || || Sbjct 29952575 GGCCTTCTTGAAAAGATCGCGAACTCTAGAAGCACCAACACCAACAAACATCTCTACGAA 29952634 Query 9476 GTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534 | | | ||| || | || || || ||| | |||||| ||||| || || | Sbjct 29952635 CTCAGAACCTGAA-ATGGAGAAAAATGGAACACCTGCTTCACCAGCAATTGCCTTTGCAA 29952693 Query 9535 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGC 9594 | || || || || || ||||| ||| | || ||| ||||| || || || | Sbjct 29952694 GCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCTTAGGGATACGAGCCC 29952753 Query 9595 CACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCC---AATTCAT 9651 || || || | |||||||||| ||| ||||| ||||| | ||||| || || | Sbjct 29952754 CAATTGCAGTAAACCTCTCAGGTTTCTTTAGAAACTCCAC---CACTTCCATGAAGTCCT 29952810 Query 9652 CTTTGGCGGCGTCAATCCCCTCAACATC 9679 ||||| | |||| || ||||||| Sbjct 29952811 GCTTGGCCTCATCAACACCAGCAACATC 29952838 >seq9 Length=39018107 Score = 113 bits (124), Expect = 5e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || || || || || || || |||||| || || |||||||| || Sbjct 26347900 GTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCC 26347959 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||| | ||| | || |||||||| |||||||||||||| ||||| || || Sbjct 26347960 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCAACGCA 26348019 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 || || || | |||||||| |||||||| Sbjct 26348020 GGCGAAGGCGAGGAGGCGCTCCGCGAAGGA 26348049 >seq6 Length=53892272 Score = 100 bits (110), Expect = 3e-16 Identities = 268/407 (66%), Gaps = 2/407 (0%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || || || |||||||| || | ||||||||| || Sbjct 15329246 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 15329187 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | |||||| | | ||| | ||||| ||||| ||||||||||| || ||||| || Sbjct 15329186 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAATAAACACAATGCA 15329127 Query 9401 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 || || ||| | || | ||||| | || | ||| || || || ||||| | Sbjct 15329126 AGG-TGCTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCACCAACACCCA 15329068 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||| ||||||||| | | || | ||| || ||| || || || ||||| | Sbjct 15329067 CAAACAACTCCACAAATTCGGATGCCGCACACGAGAAGAATGGCACGCCAGCCTCACCGG 15329008 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 | | || | || | ||| ||||| || || || || ||| | || || ||| Sbjct 15329007 CCACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGGAGGACCGACAAGAAGACAACCTT 15328948 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCT 9639 || || || || || | ||| | ||||| | ||| | ||||| || | || Sbjct 15328947 TGGGGATTTTAGCCCCCAAAGCGGTGTACTTATCAGGGTTCTTCAAGAAATCAACCACCT 15328888 Query 9640 CTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAAC 9686 ||| |||||| |||||| ||| ||| | ||||||| |||| Sbjct 15328887 CTTGCAATTCCAATTTGGCTTGATCAGCCCCAGCTACATCGGCAAAC 15328841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589944287563240