Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq2340 187 6e-43 >seq2340 Length=6312 Score = 187 bits (206), Expect = 6e-43 Identities = 343/497 (69%), Gaps = 12/497 (2%) Strand=Plus/Plus Query 26635 CGATCGAACGCCCGTTCGAGCTTCACGTCGTACAGGTTCTCTGCGTAAGCCTCGCCGTTG 26694 || ||||| || || ||||||||||||||||||||||| | ||| | |||||||| Sbjct 4440 CGCTCGAAGGCGCGCTCGAGCTTCACGTCGTACAGGTTGCGTCTGTAGTCGGCGCCGTTG 4499 Query 26695 TACAGCTCGGCGAACTTCGCCCACTTCCGGCCACGCAGCGCGGCGAGTAGCGCCTTGTCG 26754 ||||||||||||| ||| ||||| ||| || | ||| || | | || | | ||| Sbjct 4500 TACAGCTCGGCGACCTTGGCCCATTTCAGGGCCTTCAGGGCTTTGTGCAGGGTGGTATCG 4559 Query 26755 CCGAGGATGAAGCGCACGAACGCCTCGAGCTGCTCAGCTTCGCTGATCTTCATCGCGTCG 26814 | ||||||||| || || ||||| |||||||| | |||| | | ||| |||| Sbjct 4560 GCCTCGATGAAGCGGACAAAGGCCTCCAGCTGCTCGGGCTCGCCGCGCGCCATGTGGTCG 4619 Query 26815 ACGAACGCGAACACGTCCGGGTAGCCGAGCGCGTTCCAGTGAAAGCCCATGATCTGGAAC 26874 ||||| | |||||| |||||||||| | |||||| | |||||||||||||| Sbjct 4620 ACGAAGTCCTGCACGTCGATGTAGCCGAGCCGCTGCCAGTGGTACCCCATGATCTGGAAG 4679 Query 26875 GCGCCCCAGCTCGCGGCCTCGAGCGCGCACGCGGCAGAAATCTGCGACGCGCTT--GCCA 26932 ||||||||||| || | ||| || ||| | | || | || |||| || | || | Sbjct 4680 GCGCCCCAGCTGGCCGACTCCAGGGCGGCGGTGTCATCGAGCT--GACGGGCCTGGGCGA 4737 Query 26933 GGCGCGCATATTCCGCCGCGCCTCCGGCATAGCCGCCGCGCTTCGGATTGACGACGCCCG 26992 | ||| || || || | ||| ||| ||||||||| ||| |||||||| | | | | Sbjct 4738 GACGCTGATGCTCGGCGGTGCCGCCGATGTAGCCGCCGGCCTTTGGATTGACCAGGGCAG 4797 Query 26993 GATACTTTGCCGCGAGCGCGTCTGCGTCCAGGCCGGCGGCCGCGAGCTGGCGATACATCA 27052 | ||| ||| || | | |||| || || ||| || | || ||||| | Sbjct 4798 G----GTTGAGGCGGGCAAG--TTCGTCGGCGCGGGGCGCCTGCAGGCGCCGGTACATGA 4851 Query 27053 CGTGACGTTCGAACAGGATCACGGGCCGGCCGTCGGGGAGGAAGCCAGCACCGC-GCGAC 27111 | ||||| |||||||||||||| ||| ||||| | ||| || || || | ||| Sbjct 4852 CATGACGCTCGAACAGGATCACCGGCTTGCCGTTATCCA-GAAACCCGCGCCCCTTCGAT 4910 Query 27112 TCGACTTCGTTCACGGC 27128 ||||| ||||||| ||| Sbjct 4911 TCGACCTCGTTCAGGGC 4927 Score = 96.9 bits (106), Expect = 8e-16 Identities = 177/253 (70%), Gaps = 5/253 (2%) Strand=Plus/Plus Query 25889 CAGCAGCTCGGGCTGGTGAACCTTCAGCCAGGCGATGATCGGTACGATCA-GATGATCCG 25947 ||||||||||| ||||| ||| ||||||| ||| ||| || | |||| | || || | Sbjct 3389 CAGCAGCTCGGACTGGTTGACCCGCAGCCAGCCGAGGATTGGCAGCATCACGCTG-TCGG 3447 Query 25948 AATGGCCCGCGTAGTCCGTTACGACGATGTCGAGCGTATACGCATACTCGAACGAAAGCG 26007 ||||| ||| |||| || | || ||| | || | || |||||||||||||| || | Sbjct 3448 GGTGGCCGGCGAAGTCGGTCAGGATGATCTGCAGGCTGTAGGCATACTCGAACGACAG-G 3506 Query 26008 ATTGC-GCTGCGGTGACGGCGATCGACCCGTGTTCGATGAAGAGGTGCAGCCGATCCGGG 26066 | | || |||||| | || | ||| |||||||| | ||| || || || Sbjct 3507 CTGACGGCCGCGGTGCAGCGGACCTTGCCGCTATCGATGAACATCAGCAAACGGTCGGGA 3566 Query 26067 TTGCGCGCGAACTCGGGCAGGGCGGCCGTGAGCGCCGCGCGCAGGCTGTTCGGTTTGTTC 26126 ||||| || | ||||||| |||||| || | |||||||||| || || |||||| Sbjct 3567 TTGCGGGCAAGGTCGGGCACGGCGGCGAGCAGGTGCTCGCGCAGGCTATTGGGCTTGTTC 3626 Query 26127 ACGGCGCCTCCTG 26139 | || ||| |||| Sbjct 3627 ATGG-GCCACCTG 3638 Score = 84.2 bits (92), Expect = 5e-12 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 22156 ATGCGCGGTTCCCATCGGGCCAGCGCCATGACGGATGCGGCCATCACGCGCATGCGCATG 22215 || ||||||||||| || ||| |||||| ||| || || || ||||| ||| || Sbjct 1809 ATCCGCGGTTCCCAGCGCATCAGGGCCATGGCGGTCGCCGCATACAGGCGCAGGCGGGTG 1868 Query 22216 AGCGG-ATTGACCGGGCCGTCGATCAGCTCGGGAAGCAGCGACCCGTAGTCGCGGCGCAT 22274 |||| |||| ||| ||| | ||||||||| ||||| ||||| || |||||| Sbjct 1869 -GCGGCGTTGAGCGGCTGGTCAACCAGCTCGGGCAGCAGGCTGCCGTACTCTCGGCGCTC 1927 Query 22275 GACGCGCGTGCCCAGCGGCGTGAACAGAATGTCGGCGGCGGATTGTTCGATGTGCGCC 22332 |||||| |||||| | | ||| |||||||| || ||| || |||||||| || Sbjct 1928 GACGCGGGTGCCCTGGCGGGTGGTGAGAATGTCTTCGATGGACTGGGCGATGTGCTCC 1985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119026601642676