Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq2340 136 1e-27 >seq2340 Length=6312 Score = 136 bits (150), Expect = 1e-27 Identities = 328/485 (68%), Gaps = 30/485 (6%) Strand=Plus/Plus Query 23538 CGAGCTTCGCGTCGTAGAGGTTGCGGGCATAGTCCGGGCCGTTGTAGCCCTTCGCGAACG 23597 |||||||| ||||||| |||||||| ||||| | ||||||||| || |||| | Sbjct 4456 CGAGCTTCACGTCGTACAGGTTGCGTCTGTAGTCGGCGCCGTTGTACAGCTCGGCGACCT 4515 Query 23598 CGGCCCACTTCCGGTTCTTTAGGGCGGACAGCAGCGACGAGTCGGCCGCGACGAAGCGCA 23657 |||||| ||| || ||| ||||| |||| | | |||||| ||| |||||| | Sbjct 4516 TGGCCCATTTCAGGGCCTTCAGGGCTTTGTGCAGGGTGGTATCGGCCTCGATGAAGCGGA 4575 Query 23658 CGAACCCGTCGAGCTGGTCGCCTTCGCTCGTTTCCATCCGCGCGACGAACTCGTCGATGC 23717 | || | || ||||| ||| |||| |||| | ||||||| || | | | Sbjct 4576 CAAAGGCCTCCAGCTGCTCGGGCTCGCCGCGCGCCATGTGGTCGACGAAGTCCTGCACG- 4634 Query 23718 TCGC-GTAGCCGAGGCGCTTCCAGTGGTAGCCCATCACCTGGAACGCGCCCCAGCTCGCC 23776 ||| ||||||||| |||| ||||||||| ||||| | |||||| ||||||||||| ||| Sbjct 4635 TCGATGTAGCCGAGCCGCTGCCAGTGGTACCCCATGATCTGGAAGGCGCCCCAGCTGGCC 4694 Query 23777 GATTCGTAAGCCGACGCCGCGTGGATTCGCGC-----GGCAGTGTCGAGTCGCACGTATT 23831 || || | | || || ||| ||| || ||| | |||| ||| | | Sbjct 4695 GACTC-CAGGGCGGCG----GTGTCATCGAGCTGACGGGCCTGGGCGAGACGCTGATGCT 4749 Query 23832 CGGCGCTGCCGCCCTGGTAGCCTCCCGGCTTCTGGTTGACGACGTTCGAGAACAG--GAG 23889 ||||| ||||||| |||||| || | ||| | ||||| | | | | || | | Sbjct 4750 CGGCGGTGCCGCCGATGTAGCCGCCGGCCTTTGGATTGACCAGGGCAGGGTTGAGGCGGG 4809 Query 23890 CGAGTAGTGGACGGCGTCGTTCGCGCCGATGCTGTCGACGAGCTGCCGATACATAACATG 23949 | ||| | | ||||| || ||||| ||| || |||| ||||| ||||| Sbjct 4810 CAAGT--TCGTCGGCG-CG-GGGCGCC--TGC--------AGGCGCCGGTACATGACATG 4855 Query 23950 CCGCTCGAACAGGATCACGGGCCGTCCGTCCGCCAGGAAGCCCGAGCCGC-GCGATTCGA 24008 ||||||||||||||||| ||| |||| ||| ||| |||| ||| | |||||||| Sbjct 4856 ACGCTCGAACAGGATCACCGGCTTGCCGTTATCCA-GAAACCCGCGCCCCTTCGATTCGA 4914 Query 24009 CTTCG 24013 | ||| Sbjct 4915 CCTCG 4919 Score = 105 bits (116), Expect = 2e-18 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 25013 AGCACGACGCCCAGCTCGGCGAGGCCGGGATTGGCTTCCAGGACCGCTTCGACGGTGCCG 25072 |||||| |||| | ||||| ||||| || ||||| || || ||||||||||| |||| Sbjct 5627 AGCACGGCGCCGTGGTCGGCCAGGCCAGGGTTGGCATCGAGCACCGCTTCGACCACGCCG 5686 Query 25073 GCCGTGCTGGCGTAGTGCCGCCAGCAAAGGGCGTCGAGCGTTTCACCCTGAAGCGT--GG 25130 ||||||| | |||||||||||||||| ||||| |||| || || || | || || Sbjct 5687 GCCGTGCGGCCGTAGTGCCGCCAGCACAGGGCATCGACGGTGTCGTGTTGCTGGGTTCGG 5746 Query 25131 CG----ACCTTCATCAGATCAGTTCAACCGTCGAGCGCGCGACGCCCAGGATGTCGCTGA 25186 || | ||||| | ||| || || || | ||||| | || |||| ||| | || Sbjct 5747 CGCTGCTCGGCCATCACAGCAGCTCCACGGTTGTGCGCGGGGTACCAAGGAAGTCCCGGA 5806 Query 25187 TGGCCCACCGTGCGTTGCGGCGCGACTCGTCGGCGGTC 25224 |||||| || || |||||| | |||||| |||| Sbjct 5807 CGGCCCAGCGCTGGTCGCGGCGGTAGTCGTCGATGGTC 5844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129646777212654