Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq2340 136 8e-28 >seq2340 Length=6312 Score = 136 bits (150), Expect = 8e-28 Identities = 363/543 (67%), Gaps = 24/543 (4%) Strand=Plus/Plus Query 19598 CGAGCTTTGCGTCGTACAGATTGCGCGCGTAATCCGGGCCGTTGTAGCCCTTGGCGAACG 19657 ||||||| |||||||||| ||||| ||| || | ||||||||| || ||||| | Sbjct 4456 CGAGCTTCACGTCGTACAGGTTGCGTCTGTAGTCGGCGCCGTTGTACAGCTCGGCGACCT 4515 Query 19658 CCGCCCACTTCCTACCCTTCAGCGCGGAAAGCAAGGCCGTGTCGGCCGCGATAAACCGCA 19717 ||||| ||| ||||||| || ||| || || |||||| |||| || || | Sbjct 4516 TGGCCCATTTCAGGGCCTTCAGGGCTTTGTGCAGGGTGGTATCGGCCTCGATGAAGCGGA 4575 Query 19718 CGAACGCGTCGAGGTGATCGGCTTCGCTTCTCTGCATGCACGCGACGAAATCGGCGATGC 19777 | || || || || || |||| |||| | | |||| ||||||| || | | Sbjct 4576 CAAAGGCCTCCAGCTGCTCGGGCTCGCCGCGCGCCATGTGGTCGACGAAGTCCTGCACG- 4634 Query 19778 TCGAA-TAGTCCAGGGCTTGCCAGTGATAGCCCATGATTTGAAACGCGCCCCAGCTCGCC 19836 |||| ||| | || |||||||| || |||||||| || || ||||||||||| ||| Sbjct 4635 TCGATGTAGCCGAGCCGCTGCCAGTGGTACCCCATGATCTGGAAGGCGCCCCAGCTGGCC 4694 Query 19837 GACTCGTGCGAGGCGTCGGTGTCGATGCGCT---CGGCCGTCGCGAGGCGCACATACTCG 19893 ||||| | |||| ||||||| | ||| |||| ||||| ||| || |||| Sbjct 4695 GACTC---CAGGGCGGCGGTGTCATCGAGCTGACGGGCCTGGGCGAGACGCTGATGCTCG 4751 Query 19894 GCGGCCTTGCCAGCATATCCGCCGGCGGTGCTCGAT--ACGATGTTCGGATACTTCGCC- 19950 |||| ||| || |||||||| | | ||| || | | || | | | | Sbjct 4752 GCGGTGCCGCCGATGTAGCCGCCGGCCTT--TGGATTGACCAGGGCAGGGT--TGAGGCG 4807 Query 19951 -GCGAGCGCGTCGGCGTCGAGGCCTTTCGCCTTGAGGCGCTTGTAGAAAACGTGCCGCTC 20009 || || |||||||| || || ||||| |||||| ||| | || || ||||| Sbjct 4808 GGCAAGTTCGTCGGCG-CGGGG-----CGCCTGCAGGCGCCGGTACATGACATGACGCTC 4861 Query 20010 GAAAAGGATCGCCGGCCGGCCGTCGACGATGAAACCCTCGCCGC-GCGATTCGACTTCAT 20068 ||| |||||| ||||| ||||| | | ||||||| |||| | ||||||||| || | Sbjct 4862 GAACAGGATCACCGGCTTGCCGTTATCCA-GAAACCCGCGCCCCTTCGATTCGACCTCGT 4920 Query 20069 TGACCGCGCGAATCGACGCGACCGATACGCCGAGCGTGTCGGCCGCTTTCACGAGGTCGT 20128 | | || || | ||| |||| ||||| | | |||| ||||| || |||||| Sbjct 4921 TCAGGGCATAGATAGCCGCCACCGGCACGCCCAACCGCTCGGAGGCTTTGACCAGGTCGG 4980 Query 20129 CGT 20131 ||| Sbjct 4981 CGT 4983 Score = 82.4 bits (90), Expect = 2e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 17129 CGGGGTTCCCACTGCATCAGCGCGGTCGCGATCGCGGCATACAGGCGCACGCGCGTTGCG 17188 || |||||||| ||||||| || | ||| |||| ||||||||||||| ||| || ||| Sbjct 1812 CGCGGTTCCCAGCGCATCAGGGCCATGGCGGTCGCCGCATACAGGCGCAGGCGGGTGGCG 1871 Query 17189 CCATTGTTCGGCGCGTCGACCAGATCGGGCAGCTCAGAGCCGAAATCGCGGCGAGCGATG 17248 | ||| |||| ||| ||||| ||||||||| |||| | || ||||| ||| | Sbjct 1872 GCGTTGAGCGGCTGGTCAACCAGCTCGGGCAGCAGGCTGCCGTACTCTCGGCGCTCGACG 1931 Query 17249 CGCGAGCC 17256 || | ||| Sbjct 1932 CGGGTGCC 1939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103286727093498