Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6 122 7e-22 seq8 116 3e-20 seq7 113 4e-19 seq5 95.1 1e-13 seq9 93.3 3e-13 seq10 86.0 5e-11 >seq6 Length=53892272 Score = 122 bits (134), Expect = 7e-22 Identities = 163/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| ||||| |||||||| ||| ||||| || ||||| || || | || Sbjct 43309949 GAGACGGAGGACAAGGTGAAGGGTCGATTCCTTTTGG--ATGTTGTAGTCGGCCAATGTC 43309892 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || ||||||||||||||| || ||||| || || |||||||| || |||||||| || Sbjct 43309891 CTGCCATCTTCAAGTTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCC 43309832 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 ||||| || |||||||| || || || | ||||||| | | || || || Sbjct 43309831 TCTTTGTCCTGAATTTTAGCCTTCACATTGTCGACAGTATCAGAGCTTTCGAC-CTCAAG 43309773 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| || || ||||| ||||| || |||||||| ||||| Sbjct 43309772 AGTAATCGTCTTCCCAGTGAGAGTCTTCACGAAAATCTGCAT 43309731 Score = 111 bits (122), Expect = 1e-18 Identities = 357/547 (65%), Gaps = 8/547 (1%) Strand=Plus/Plus Query 552042 GATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGAT 552101 ||| | ||||| || || || || |||||| || ||| || ||||| ||||| || Sbjct 48078738 GATTTGTTTAGGAAGTGTATGGAGCCCGTAGAAAAATGTTTGAGGGATTCGAAGATCGAC 48078797 Query 552102 AAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGC 552161 || | || ||||| |||| || |||||||| || || || || || ||| ||| Sbjct 48078798 AAGAGTCAGGTTCATGATGTTGTTCTCGTTGGTGGGTCGACGAGGATCCCGAAAGTTCAG 48078857 Query 552162 GAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG--TTAATCCAGAT 552218 || | || || ||| || ||| || || | || || ||| | |||| || ||| Sbjct 48078858 CAACTCTTGCAGGACTTCTT-CAACGGAAAGGAGTTG--TGCAAGAGCATTAACCCTGAT 48078914 Query 552219 GAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAA 552278 ||||||||||| ||||| || ||| | ||||| || || | |||| || ||||| Sbjct 48078915 GAGGCTGTTGCTTATGGGGCTGCAGTCCAAGCTGCAATCTTGACTGGTGAAGGGGATGAG 48078974 Query 552279 AAACTACAAAATATTGTACTTG-TAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGT 552337 ||| | || | ||| |||| | || || || ||||| || || | || || | Sbjct 48078975 AAAGTGCAGGA-CTTGCTCTTGCTCGACGTCACACCTCTGAGCCTCGGACTTGAGACCGC 48079033 Query 552338 TGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCG 552397 || ||| | |||||| ||||||| || || || || || || || ||| | Sbjct 48079034 GGGTGGTGTGATGACTGTTCTTATCCCGAGGAACACAACGATCCCAACGAAGAAAGAGCA 48079093 Query 552398 TGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGA 552457 ||||| || ||||| || |||||||| | | ||| || || | | ||||| || Sbjct 48079094 GGTATTCTCGACGTACTCCGATAATCAGCCAGGTGTGCTCATCCAGGTGTACGAAGGCGA 48079153 Query 552458 AAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCC 552517 || || ||||| || |||| || || | || | | || || ||||| Sbjct 48079154 GAGGGCGAGGACGAAAGACAACAATCTTCTGGGCAAATTCGAGCTCACGGGCATCCCTCC 48079213 Query 552518 TGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTT 552577 ||| || | || || || || || | || |||||| |||||||| ||||||||| | Sbjct 48079214 TGCCCCAAGAGGTGTTCCACAGATCAATGTATGTTTCGACATCGATGCAAATGGAATTCT 48079273 Query 552578 GAATGTG 552584 |||||| Sbjct 48079274 CAATGTG 48079280 Score = 107 bits (118), Expect = 2e-17 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 ||| ||||| || || | ||||| || |||||| || || ||||| || ||||| Sbjct 13058656 CCTAAGACGCAGAACCAAGTGAAGAGTCGATTCTTTCTGGATGTTATAATCTGCCAGAGT 13058715 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 || |||||| || || || || |||||||| || || |||||||| || ||||| || Sbjct 13058716 CCTGCCATCTTCTAGCTGCTTCCCAGCAAAAATGAGCCTCTGCTGATCTGGGGGAATGCC 13058775 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 ||| || || |||||||| ||| || || || || |||| | | ||| | Sbjct 13058776 TTCCTTGTCCTGAATTTTCGCTTTGACATTGTCGATGGTGTCAGAGCTCTCAACTTCCAA 13058835 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| | ||||| ||||||||||| || || || |||||||| Sbjct 13058836 AGTGATTGTTTTCCCAGTAAGAGTCTTGACAAAGATTTGCAT 13058877 Score = 105 bits (116), Expect = 5e-17 Identities = 161/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || || | ||||| || ||| | | ||| || || ||||| || ||| Sbjct 13065376 CCTCAGACGCAGAACCAAGTGAAGAGTCGACTCTTTCTGG--ATGTTATAATCTGCCAGA 13065433 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || || ||| || || ||||| || ||||||||||| || |||||||| || ||||| Sbjct 13065434 GTCCTACCATCCTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATG 13065493 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTC 563429 ||||| || || |||||||| ||| || || || ||||||| | | || ||| Sbjct 13065494 CCTTCCTTGTCCTGAATTTTCGCTTTGACATTGTCGATGGTATCAGAGCTCTCCAC-TTC 13065552 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||| | || || |||||||| || || || || |||||||| Sbjct 13065553 CAAAGTGATTGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCAT 13065597 Score = 89.7 bits (98), Expect = 4e-12 Identities = 165/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||||||||| || | || ||||| || || ||| || ||||| || | || Sbjct 43309268 CCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCCAAGGT 43309209 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 || |||||| || || || || ||||| ||||| || ||||| || ||||| || || Sbjct 43309208 TCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATCCC 43309149 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGA 563431 ||| || || || |||||| ||| || || | ||| || | | | || |||| Sbjct 43309148 TTCCTTGTCCTGGATTTTTGCTTTCACATTATCGACTGTGTCCGAGCTTTCCAC-CTCGA 43309090 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT-AGACATCTTGGTTA 563488 | || | || || |||||||| ||||| || || |||||||| || ||| || ||| Sbjct 43309089 GGGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCATCTGAGATCATGATTA 43309032 Score = 89.7 bits (98), Expect = 4e-12 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||||||||| || | || ||||| || || ||| || || || || || || Sbjct 43309496 CCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCTGCAAGCGT 43309437 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 || |||||||| || ||||| |||||||| || || ||||| || || ||||| || Sbjct 43309436 CCTCCCGTCTTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCCGGTGGAATACC 43309377 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAG 563432 || || ||||| || || || || ||||| || |||| | | ||| || Sbjct 43309376 CTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACTTCTAG 43309317 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || ||||| ||||| || || || |||||||| Sbjct 43309316 GGTAATTGTCTTCCCAGTGAGAGTCTTCACAAAGATTTGCAT 43309275 >seq8 Length=74329289 Score = 116 bits (128), Expect = 3e-20 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGT 563312 |||||||||||| || | |||||||| ||| || ||| || |||||||| | ||| Sbjct 36266046 CCTGAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATAATCAGCCAAAGT 36265987 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | | ||| ||||| || || || ||||| ||||| || ||||| ||||| || ||||| Sbjct 36265986 GCGTCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCAGGGGGGATTCC 36265927 Query 563373 TTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGA 563431 || || ||||| || || ||| || || ||||| || | | | || |||| Sbjct 36265926 CTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCTGAGCTTTCGAC-CTCGA 36265868 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || | || || |||||||| ||||| |||||||||||||| Sbjct 36265867 GGGTGATGGTCTTGCCAGTAAGGGTTTTCACGAAAATTTGCAT 36265825 Score = 98.7 bits (108), Expect = 8e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 563293 ATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTT 563352 || |||||||| || | ||| || ||| ||||||||||| || ||||| ||||| ||| Sbjct 36266690 ATGTTGTAATCCGCCAAAGTCCTACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGCCTT 36266631 Query 563353 TGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTA 563412 |||||||| || ||||| ||||| || || |||||||| ||| || ||||| || Sbjct 36266630 TGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATTTTGGCTTTGACATTGTCAATGGTG 36266571 Query 563413 TCAGTGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGC 563472 || | | | ||| | ||| | || || ||||| || || || || || |||||| Sbjct 36266570 TCGGAGCTCTCAACTTCCAAAGTGATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTGC 36266511 Query 563473 AT 563474 || Sbjct 36266510 AT 36266509 >seq7 Length=52445601 Score = 113 bits (124), Expect = 4e-19 Identities = 116/149 (78%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| | ||||| || || || || |||||||||||| | || | Sbjct 3746027 AAGTAACTAAAGCAGTGGTCACTGTTCCTGCTTACTTCAATGACTCACAAAGGACCGCAA 3745968 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTA-ATGTTCTTCGTATTATCAATGAACCTACT 550507 | || |||||||||||||||||||| |||| | || ||||| ||||| |||||||||||| Sbjct 3745967 CAAAGGATGCTGGACGTATTGCTGG-CTTAGAAGTGCTTCGCATTATTAATGAACCTACT 3745909 Query 550508 GCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| | || |||||||| |||| || Sbjct 3745908 GCTGCATCGCTGGCATATGGGTTTGAAAA 3745880 Score = 86.0 bits (94), Expect = 5e-11 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 ||| |||| | |||| ||| |||| | | || || | || | | || || || || Sbjct 18101477 GAAGATGAGAGAAACTGCCGAGGCTTATTTGGGGAAATCAATTTCAAAAGCTGTTATTAC 18101536 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| ||||| ||||| ||||| | || | || || || ||||||||||| | ||||| Sbjct 18101537 TGTTCCAGCCTATTTCAATGATGCTCAGAGACAGGCAACAAAAGATGCTGGGAGGATTGC 18101596 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || ||| |||| | || |||||||| || ||||| ||||| ||| ||||||| Sbjct 18101597 AGGGCTTGATGTAGAAAGAATCATCAATGAGCCCACTGCAGCTGCTCTTTCATATGG 18101653 >seq5 Length=74729908 Score = 95.1 bits (104), Expect = 1e-13 Identities = 92/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 550416 CAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGAC 550475 |||| || || ||||| | ||| | |||||||| || || ||||| |||||||||| Sbjct 10809659 CAGCCTACTTCAATGATGCCCAAAGGCAAGCTACCAAGGACGCTGGTGTAATTGCTGGAC 10809718 Query 550476 TTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 | |||||| | | |||||||||||||| ||||||||||| |||| ||||| |||| Sbjct 10809719 TGAATGTTGCTAGAATTATCAATGAACCCACTGCTGCTGCCATTGCGTATGG-CTTG 10809774 >seq9 Length=39018107 Score = 93.3 bits (102), Expect = 3e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | ||||| || || || || ||||| || || | ||||||||| ||||| Sbjct 38689787 GCAGTTGTGACTGTTCCGGCTTACTTCAATGATTCGCAGAGGACAGCTACTAAGGATGCC 38689728 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || ||||||||||| | | |||||||| || |||||||||||||| ||||| | | Sbjct 38689727 GGTCGTATTGCTGGCTTGGAAGTTCTTCGCATAATCAATGAACCTACCGCTGCATCCTTG 38689668 Query 550520 GCATATGGACTTGA 550533 || |||||| |||| Sbjct 38689667 GCTTATGGATTTGA 38689654 >seq10 Length=39358841 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | || || || || || ||||||||||| || | || || || || ||||| Sbjct 456889 GCAGTCGTCACCGTCCCTGCCTACTTTAATGACTCTCAGAGGCAGGCCACCAAGGATGCC 456948 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || |||||||| || ||||| | ||||| |||||||| || |||||||| || | Sbjct 456949 GGTGTCATTGCTGGCCTCAATGTCATGCGTATCATCAATGAGCCGACTGCTGCGGCCATC 457008 Query 550520 GCATATGGACTTGATAA 550536 || ||||| ||||| || Sbjct 457009 GCTTATGGTCTTGACAA 457025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029034168790990