Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq4951 464 2e-126 seq137 223 1e-53 seq104 215 2e-51 seq8 192 2e-44 seq11 116 1e-21 seq2 107 6e-19 seq846 95.1 4e-15 seq5 95.1 4e-15 >seq4951 Length=160137 Score = 464 bits (514), Expect = 2e-126 Identities = 697/985 (71%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || || || |||||||| || | |||||||| || || | Sbjct 1552 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1493 Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920 ||||| || |||| | | || ||| | ||| ||||| |||||||||| || || || Sbjct 1492 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 1434 Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980 || |||||||| ||||| || ||||| || ||||| || || || | || |||||||| Sbjct 1433 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1374 Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040 ||| || || || || | | || | ||| || || || | ||||||||||| || Sbjct 1373 TATTATCTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAAT 1314 Query 26041 CTGGGAAGCTGGCA-CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTA 26099 |||||||| |||| | | || || ||| ||||||| ||||| || ||| | || ||| Sbjct 1313 ATGGGAAGC-GGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTG 1255 Query 26100 TCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACA 26159 | | ||||| ||| | || ||||| || || | |||||||||| || | Sbjct 1254 TTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1195 Query 26160 GACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCG 26219 | || || ||| | || ||||| |||||||||| |||| || | | || ||| | Sbjct 1194 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1135 Query 26220 CAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTA 26279 | || ||||| | || || | || ||||| |||||| ||||| |||||||| || | Sbjct 1134 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCGGATGGTATGCCTCTAGGAA 1075 Query 26280 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACC 26339 | ||||||||||| ||||| ||| | |||||||| || || || || || || ||||||| Sbjct 1074 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1015 Query 26340 CATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACG 26399 |||| || ||| || || ||||| || ||||| || | || ||| ||||||||| | Sbjct 1014 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 955 Query 26400 GAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATG 26459 | ||||| || || | || ||||| ||||| | | || ||| | | Sbjct 954 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 895 Query 26460 GCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 26519 | || | || || ||||| ||||| || |||||||| || ||||| || || || |||| Sbjct 894 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 835 Query 26520 GGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTG 26579 | |||| || || || ||||| ||||| || || |||||| | || ||||| || | Sbjct 834 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAG 775 Query 26580 CTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTA 26639 || ||||||| || || || || ||| | || || | |||||| |||| ||||| || | Sbjct 774 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCA 715 Query 26640 ACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTA 26699 ||||||||||||| || || ||||| || ||||| ||| | | || |||| || Sbjct 714 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATA 655 Query 26700 CATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATG 26759 | ||||||||| | | || || |||||||| || | ||||||||||| || ||||||| Sbjct 654 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 595 Query 26760 CTCATAACTTTCCACTTGACTTAGC 26784 |||||||||| || || ||| |||| Sbjct 594 CTCATAACTTCCCTCTAGACCTAGC 570 >seq137 Length=120145 Score = 223 bits (246), Expect = 1e-53 Identities = 297/413 (72%), Gaps = 0/413 (0%) Strand=Plus/Plus Query 26243 GGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATG 26302 || ||||| |||||| |||| |||||||| || || ||||||||||| ||||| ||| Sbjct 112718 GGTCAAGGAAGTTTTTCGAATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATG 112777 Query 26303 TTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCT 26362 | |||||||| || || || ||||| || ||||||||||| || ||| || || ||| Sbjct 112778 ATTGTATTCCAGGCTGAGCACAATATCCTTATGCACCCATTTCACATGTTAGGCGTAGCT 112837 Query 26363 GGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTT 26422 || || ||||| || | || ||| ||||||||| || ||||| || || | Sbjct 112838 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 112897 Query 26423 ATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAA 26482 || ||||| ||||| | | || ||| | || || | || || ||||| ||| Sbjct 112898 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAA 112957 Query 26483 GAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCG 26542 || || |||||||| || ||||| || || || ||||| |||| || || || ||||| Sbjct 112958 GAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 113017 Query 26543 AGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATA 26602 ||||| || || |||||| | || ||||| || ||| ||||||| || || || || Sbjct 113018 AGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATC 113077 Query 26603 TGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAA 26655 | | | || || | |||||| |||| ||||| || |||||||||||||| || Sbjct 113078 TAGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAA 113130 >seq104 Length=304272 Score = 215 bits (238), Expect = 2e-51 Identities = 434/644 (67%), Gaps = 0/644 (0%) Strand=Plus/Minus Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201 |||||||||| || | | || || ||| | || ||||| ||||||| ||| |||| | Sbjct 122954 AGTGGGAACTTAGTTTCCGTCTGGGTATGTGCCCTTGGATTGTTGTTGCTTATTCAGCTC 122895 Query 26202 CACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTG 26261 | | | || ||| | || ||||| | || || | || ||||| |||||| | Sbjct 122894 CTGTTGCAGCTGCTACCATTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTTGG 122835 Query 26262 ATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 26321 |||| |||||| | | || ||| ||||||| | | ||| ||| ||| | || || Sbjct 122834 ATGGTATGCCTTTATGAATTTCTAGTACTTTCATTTCCATGATCGCATTATAGGCTGAGT 122775 Query 26322 ATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTC 26381 | || || || | |||| ||| || ||| || | | ||| || || ||||| | Sbjct 122774 ACAACATCCTTACACACCAATTTCACATGTTAGGCATGGTTGGTGTATTTGGTGGCTCCT 122715 Query 26382 TTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGG 26441 | ||| ||||||||| || || || || || | || ||||| ||| | Sbjct 122714 TATTCAGTGCTATGCATGGTTCCTTAGTAACCTCTAGTTTGATAATGGAAACCACAAAAA 122655 Query 26442 AAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCG 26501 | | || ||| | || |||| || | ||||| ||||| || ||||||||||| | Sbjct 122654 ATGAATCTTCTAATGAAGGTTATAGATTCGATCAAGAGGAAGAAACTTATAATATTGTAG 122595 Query 26502 CTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTT 26561 |||| || || || ||| ||| |||||||| ||| | |||||||| || | || Sbjct 122594 CTGCTCATGGTTATTTTCACTAATTGATTTTTCAATATACTAGTTTTAACAATTCTCATT 122535 Query 26562 CTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTA 26621 || | || ||||| | ||| |||||| || || | || | | | || || | |||| Sbjct 122534 CTTTACACTTCTTCTTAGCTGCTTGGCTCGTAGTAGATATCTAGTTCACTGCTTTAGGTA 122475 Query 26622 TCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTA 26681 | ||| ||||| || |||||||||||||| || || ||||| || |||| |||| | Sbjct 122474 TTAGCATTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCATAGTTGATGGTC 122415 Query 26682 ATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAG 26741 | || | |||| ||| || ||| || | | || || ||||||| || | |||| Sbjct 122414 AAGGTCATGTAATTAATACTTGAGCTAATATTATTAATCGTACTAACCTTGGTATGGAAG 122355 Query 26742 TTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGCA 26785 ||||||| |||||||||||||||||||| | || ||| ||||| Sbjct 122354 TTATGCATGAGCGTAATGCTCATAACTTCACTCTAGACCTAGCA 122311 >seq8 Length=74329289 Score = 192 bits (212), Expect = 2e-44 Identities = 382/565 (68%), Gaps = 12/565 (2%) Strand=Plus/Minus Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281 || ||||| | || || | || ||||| |||||| ||||| |||||| | | || Sbjct 23727060 GTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCGGATGGTATGCCTTTATGAATT 23727001 Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341 ||||||||||| ||||| || | ||||| ||||| | | ||||| || ||||||||| Sbjct 23727000 TCTGGTACTTTCAACTTCATAATTGTATTACAAGCTAAGTACAATATCCTTATGCACCCA 23726941 Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC--G 26399 || || ||| | ||| | || |||| || ||| || || ||| | Sbjct 23726940 TTTCACATGTTAGACACAGCTAGTGTATTCGACGG--CTCCTT--------ATTCACATG 23726891 Query 26400 GAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATG 26459 | |||| || || | |||| ||||| ||| | | | || ||| | | Sbjct 23726890 GTTCCCTGGTAACCTCTAGTTTGATTGGGGAAACCACATAAAATGAATCTGCTAATGAAG 23726831 Query 26460 GCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 26519 | || | || | ||||| ||||| || ||||||||||| ||||| || || || || Sbjct 23726830 GTTACACATTCAGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATATTC 23726771 Query 26520 GGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTG 26579 ||| || ||||| ||| | |||||||| || | || | | ||||||| | | Sbjct 23726770 ACTAATTGATCTTTCAATATACTAGTTTTAACAATTCTCATTGTTTATATTTCTTCTTAG 23726711 Query 26580 CTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTA 26639 |||||||||| || || || || ||| | || || | ||||| |||| ||||| || | Sbjct 23726710 CTACTTGGCCCGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 23726651 Query 26640 ACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTA 26699 | ||||||||||| || || ||||| | ||||| ||| | | || |||| || Sbjct 23726650 AACTAAATGGTTTCAATTTCAACCAATTTGTAGTTAATGGTCAAGGTCGTGTAATTAATA 23726591 Query 26700 CATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATG 26759 | |||||| || | | || || |||||||| || | ||||||||||| || | ||||| Sbjct 23726590 CTTGGGCTAATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACATAATG 23726531 Query 26760 CTCATAACTTTCCACTTGACTTAGC 26784 |||||||||| || || ||| |||| Sbjct 23726530 CTCATAACTTCCCTCTAGACCTAGC 23726506 >seq11 Length=45509462 Score = 116 bits (128), Expect = 1e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 26504 GCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCT 26563 || || || || ||||| |||| || || || ||||| ||||| || || |||||| Sbjct 27046473 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 27046532 Query 26564 CTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATC 26623 | || ||||| || ||| ||||||| || || || || ||| | || || | |||||| Sbjct 27046533 TTACACTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATC 27046592 Query 26624 TGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT 26677 |||| ||||| || |||||||||||||| || || ||||| || ||||| ||| Sbjct 27046593 AGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAT 27046646 Score = 109 bits (120), Expect = 2e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 || || ||||| | || || | || ||||| |||||| ||||| |||||||| || Sbjct 19769035 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCGGATGGTATGCCTCTAGGA 19769094 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 || ||||||||||| ||||| ||| | |||||||| || || || || || || |||||| Sbjct 19769095 ATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 19769154 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGG 26376 ||||| || ||| || || ||||| || ||||| || Sbjct 19769155 CCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGG 19769192 >seq2 Length=64235786 Score = 107 bits (118), Expect = 6e-19 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 26529 TTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGC 26588 |||| || ||||| ||||| || || |||||| | || ||||| || ||| |||||| Sbjct 43658959 TTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGGC 43659018 Query 26589 CGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATG 26648 | || || || || ||| | || || | |||||| |||| ||||| || |||||||||| Sbjct 43659019 CTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATG 43659078 Query 26649 GTTTTAACTTTAACCAGTCAGTAGTAGAT 26677 |||| || || ||||| || ||||| ||| Sbjct 43659079 GTTTCAATTTCAACCAATCCGTAGTTGAT 43659107 >seq846 Length=16005 Score = 95.1 bits (104), Expect = 4e-15 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201 |||||||||| || | ||||| ||| || ||||| ||||||||||| || | | Sbjct 1995 AGTGGGAACTTAGTTTCCATCTAGGTATGTACCCTTGGATTGTTGTTGCATATTCATCTC 1936 Query 26202 CACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTG 26261 | | | | ||| | || | ||||| | || | | || |||| |||||| Sbjct 1935 CCGTTGCAACTGCTATTGCTATTTTCTTGATCTACCTAATTGGTTAAGGAAGTTTTTCGA 1876 Query 26262 ATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 26321 || | |||||||| || || ||||||||||| ||||| ||| | || |||||||| || | Sbjct 1875 ATTGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTCTTCCAAGCTGAGC 1816 Query 26322 ATAATATACTCATGCACCCATT 26343 |||| || || || |||||||| Sbjct 1815 ATAACATCCTTATACACCCATT 1794 >seq5 Length=74729908 Score = 95.1 bits (104), Expect = 4e-15 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 26573 TTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATG 26632 || || ||| ||||||| || || || || ||| | || || | |||||| |||| ||| Sbjct 13157527 TTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATG 13157468 Query 26633 GCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATA 26692 || || |||||||||||||| || || ||||| || |||| ||| | | || || Sbjct 13157467 GCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCCTAGTTGATAGTCAAGGTCGTGTA 13157408 Query 26693 ATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTA 26744 || ||| ||||||||| | | || || |||||||| || | ||||||| Sbjct 13157407 ATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTA 13157356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146717773496424