Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6 109 4e-19 seq1 105 5e-18 seq8 82.4 6e-11 >seq6 Length=53892272 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || || ||| || ||||| ||||| || | || | | Sbjct 43310176 AGGCGGAGCACCAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAGTCCGCAAGGGTCCTC 43310117 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 | || |||| |||||||||||| || ||||||| |||||| |||| ||||| | ||||| Sbjct 43310116 CCATCCTCCAGCTGCTTACCGGCGAAAATCAGTCTCTGTTGGTCCGGTGGGATC-CCCTC 43310058 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||| || ||| | | | || ||||| ||| ||||||| || Sbjct 43310057 CTTGTCTTGGATCTTTGCCTTAACATTATCAATAGTGTCTGAACTCTCAACCTCCAAGGT 43309998 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| |||| || || || ||||||||||| Sbjct 43309997 GATGGTTTTTCCTGTCAGGGTCTTGACGAAAATCTGCAT 43309959 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||||||||||||||||| || | | | || || | ||||| || ||||| Sbjct 13058458 CTCCTTTTGAATATTGTAATCAGCCAGTGTCCTGCCATCCTCAAGTTGCTTCCCTGCAAA 13058517 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| |||||||| || | ||| | ||||||||||| |||||| ||| ||| Sbjct 13058518 AATCAACCGCTGTTGGTCTGGGGGGATTCCCTCCTTGTCCTGTATCTTTGCTTTGACATT 13058577 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||||||||||| || || || || || || | || ||||| Sbjct 13058578 ATCGATCGTGTCAGAGCTCTCCACCTCCAAGGTGATAGTCTTGCCAGTAAGGGTCTTTAC 13058637 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 13058638 AAAAATCTGCAT 13058649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || || | ||||||||| || ||| ||| || ||||| || ||||||| Sbjct 13066054 GCCACCTCTCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGAATGTTATAATCAGC 13066113 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || | |||||| |||||||| || || | ||| || |||| ||| Sbjct 13066114 CAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGGGG 13066173 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| |||||| |||||| | | | || || || || Sbjct 13066174 GATTCCCTCCTTGTCTTGAATCTTGGCCTTTACATTGTCAATTGTGTCCGAGCTTTCAAC 13066233 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | ||||| || || || || | || || ||||| |||||||| Sbjct 13066234 CTCGAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 13066281 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||| ||||| || || |||| ||| | | |||| || Sbjct 13064933 ACCAAGTGCAGGGTCGACTCTTTCTGAATGTTATAGTCAGCCAGAGTCCTCCCGTCTTCG 13064992 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || ||||| ||||| | ||| || |||| || | ||||||||| || Sbjct 13064993 AGTTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGG 13065052 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | || | ||||| ||||||||||| || || || || Sbjct 13065053 ATCTTCGCCTTCACGTTGTCGACGGTGTCTGAACTCTCCACCTCCAAAGTGATGGTCTTC 13065112 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || |||| || || ||||| ||||||||| Sbjct 13065113 CCGGTCAGGGTCTTGACAAAGATCTGCATC 13065142 >seq1 Length=40297282 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| | ||||| ||| | ||| || || ||| || || ||||||||||| | Sbjct 18088773 GCCTCCCCTCAACCGCAGCACGAGATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGC 18088714 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| |||| |||| |||||| ||||| || || || ||||| ||||||| || Sbjct 18088713 GAGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGCGG 18088654 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| |||||| || || | | | || || |||||| Sbjct 18088653 GATCCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGCTCTCCAC 18088594 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||| ||||| || || |||| || || || || || ||||| Sbjct 18088593 CTCCAGCGTGATCGTCTTCCCAGTCAGGGTCTTGACGAAGATGTGCAT 18088546 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 |||||| || | || |||| || | || || || ||| || || ||||||||||| Sbjct 18089004 GTCGCCACCGCGGAGGCGCAGAACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAATC 18088945 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655 | || | || ||||| |||| |||||| ||||| || || |||||||| ||||||| Sbjct 18088944 GGCGAGGGTGCGTTCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGATCCGG 18088885 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 || | ||||||||| || ||||||| || || | | | || || ||| Sbjct 18088884 CGGGATGCCCTCCTTATCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCCGAGCTCTC 18088825 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| ||| ||||| || || |||| || || || || |||||||| Sbjct 18088824 CACCTCCAGCGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAGATCTGCAT 18088774 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | |||| ||| | ||| || || |||||| || ||||||||||| | Sbjct 18075904 CCTCCCCTCAAGCGCAGCACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAATCGGCG 18075845 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| |||| |||||| ||||| || || || ||||| ||||||| || Sbjct 18075844 AGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGTGGG 18075785 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| || || || || | | | | || || ||||||| Sbjct 18075784 ATGCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTATCGATCGTGTCCGAGCTCTCCACC 18075725 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||| || || || || |||| ||| || || || |||||||| Sbjct 18075724 TCGAGCGTGATGGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 18075678 >seq8 Length=74329289 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||||| || || | || | || || ||| ||| || || || ||||| || | Sbjct 11070070 CGCCGCCCCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 11070011 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || |||| || | |||||| ||||| || || || ||||| || || | | Sbjct 11070010 CGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCG 11069951 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | || || | ||||| Sbjct 11069950 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCA 11069891 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| || || || || ||||||| ||||| || || ||||||||| || Sbjct 11069890 CCTCCAGGGTGATGGTCTTCCCCGTCAGGGTTTTCACGAAGATCTGCATCTTG 11069838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380914614106173