Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq9 237 3e-57 >seq9 Length=39018107 Score = 237 bits (262), Expect = 3e-57 Identities = 576/864 (67%), Gaps = 24/864 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||| || | ||||| |||||||| |||||||||| || ||||||| ||| Sbjct 26347597 CTGGTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTC 26347656 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||| || ||| ||||| | || |||||| || | ||| | | | || | Sbjct 26347657 CATCCAGTCGAACGGGTTCGTCACGTCGTACACCT-TGCCGCAGCCGAGCGCGCCGAGAA 26347715 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || |||||| |||||||||| | ||| ||| | ||||||| || | |||| Sbjct 26347716 GCCGGTCGGCGACGAACTCGATGTACTGGCCCATCAGGTCGCTGTTCATCCCAACCAGGG 26347775 Query 48018 A-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||||| || || | || |||||| ||| || | ||||| |||| ||| ||| Sbjct 26347776 CGCACGG-CAGCGCGTCGCAGACGAACTCCCGCTCGATGTCGACGGCCTCCCGCACGATC 26347834 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 ||| || || ||| || ||||| ||||| || | ||||| | |||||| Sbjct 26347835 CCCTTCACCCGCTCCTCGCTCGGCTTGTTCCGCAGCAGCGAG---TAGAGGAGGCAGGCG 26347891 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | ||| ||||| || ||||||| |||| |||||| ||| || ||| Sbjct 26347892 AAGTCGCAGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGC 26347951 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| |||| || ||||||||||| || || ||| ||| ||||||||||| ||| Sbjct 26347952 ATGAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCC 26348011 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG 48316 || || ||||| ||| ||| | ||| |||| || | | | | ||||||| Sbjct 26348012 TCAACGCAGGCGAAGGCGAGGAGGCGCTCCGCGAAGGA---CTCCCCGCCGTCGATCCAG 26348068 Query 48317 GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA-- 48374 || |||||||| ||||| || | || | || || | ||| ||||||| Sbjct 26348069 CGGAGGGCCCAGTCGGCCTTGCGGGCGACGGCCGGGACGGTGTCGACGGCGCGGAAGAGG 26348128 Query 48375 -GCTTCTTGCACTCACCTGCGTCCGCAACATAGGT----AGTGAGCAGCTTTGCGTACAT 48429 | | ||| ||| | | |||| || ||||| ||| | ||| |||||| Sbjct 26348129 CGGTCCTT---CTCGGCGGAGTCCTTGACGTAGGTCTCCAGTAGGAGGCT----GTACAT 26348181 Query 48430 CTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACAC 48489 ||| ||||| | ||||| || ||||||||||| ||||||||||| | |||||| | | Sbjct 26348182 CTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCCGAGAG 26348241 Query 48490 CTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGC 48549 ||| || || | ||| | | || ||||| ||| || || || || || || Sbjct 26348242 CTGGACCTCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGC 26348301 Query 48550 AAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCC 48609 |||||||| || || || | | ||| ||||||||| || |||||| | | |||| Sbjct 26348302 GAAGAAGGCGAGCACGTGGGTGACGAAGTGGCGCTCGCCGTCGGTGAGGCCCTCCCAGTG 26348361 Query 48610 CTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTT 48669 | | ||| | | ||||| || || || | ||||||||||| || || | || Sbjct 26348362 GCGGAGGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCCGCCTGCTT 26348421 Query 48670 GTACATGCCCCATATGTCCGGATA 48693 |||||| |||| || | ||| || Sbjct 26348422 GTACATCTCCCAGATCTGCGGGTA 26348445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931475149763840