Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9 181 2e-40 >seq9 Length=39018107 Score = 181 bits (200), Expect = 2e-40 Identities = 549/848 (65%), Gaps = 12/848 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||| |||| | ||| |||||||||||| ||| | || || Sbjct 26348436 ATCTGGGAGATGTACAAGCAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGACCTC 26348377 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 || ||||| | | |||| | | || || | | ||||| || || ||| || Sbjct 26348376 TCCCAGGACCTCCGCCACTGGGAGGGCCTCACCGACGGCGAGCGCCACTTCGTCACCCAC 26348317 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 ||| | || ||||| || ||||| || || || || |||||| || || | ||| Sbjct 26348316 GTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGCTTC 26348257 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | | ||| || ||| | ||||||| |||||||| |||||||| |||||||| Sbjct 26348256 ATGAAGGAGGTCCAGCTCTCGGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAG 26348197 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAG 25776 || | ||||| ||| |||| | || ||| ||| ||| | | ||| ||||||| Sbjct 26348196 AACATCCACTCCGAGATGTACAGCCTCCTACTGGAGACCTACGTCAAGGACTCCGCCGAG 26348137 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA-TCAAGAGGAAGGCGCGGTG 25835 | || || || || | ||| |||| ||| ||| || || | ||||| || Sbjct 26348136 AAGGACCGCCTCTTCCGCGCCGTCGA-CACCGTCCCGGCCGTCGCCCGCAAGGCCGACTG 26348078 Query 25836 GGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 |||| | |||||| || || | | | || | ||||| || | ||||| || Sbjct 26348077 GGCCCTCCGCTGGATCGACGGCGGG---GAGTCCTTCGCGGAGCGCCTCCTCGCCTTCGC 26348021 Query 25896 -TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAG 25953 ||| || ||||| ||||| ||| ||| || |||| ||||||||||||||||| || Sbjct 26348020 CTGC-GTTGAGGGGATCTTCTTCTCCGGCAGCTTCTGCG-CCATCTTCTGGCTCAAGAAG 26347963 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 ||| |||||| ||||| ||| || |||||||||||| | |||||||| ||| Sbjct 26347962 CGGGGCCTCATGCCGGGGCTCACCTTCTCGAACGAGCTCATCTCTCGCGACGAGGGCCTC 26347903 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073 ||| | || || |||||||| |||||| || | ||| |||| || | ||| Sbjct 26347902 CACTGCGACTTCGCCTGCCTCCTCTACTCG---CTGCTGCGGAACAAGCCGAGCGAGGAG 26347846 Query 26074 ACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNN 26133 || | | ||| | ||||| || || |||||| |||||| Sbjct 26347845 CGGGTGAAGGGGATCGTGCGGGAGGCCGTCGACATCGAGCGGGAGTTCGTCTGCGACGCG 26347786 Query 26134 NNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTG 26193 | || ||||||| | || ||| |||| ||||| |||| || Sbjct 26347785 CTGCCGTGCGCCCTGGTTGGGATGAACAGCGACCTGATGGGCCAGTACATCGAGTTCGTC 26347726 Query 26194 GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTC 26253 ||||||| || || || ||| || || || | ||| | | ||||||||| Sbjct 26347725 GCCGACCGGCTTCTCGGCGCGCTCGGCTGCGGCAAGGTGTACGACGTGACGAACCCGTTC 26347666 Query 26254 GACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGC 26313 |||| ||||| ||| ||| || | ||||||||||||||||| || ||| ||||||| Sbjct 26347665 GACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAGCGGGTCGGG 26347606 Query 26314 GACTATCA 26321 || || || Sbjct 26347605 GAGTACCA 26347598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928787316117440