Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq2340 100 5e-17 >seq2340 Length=6312 Score = 100 bits (110), Expect = 5e-17 Identities = 183/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 2537 CGGTTTTCCACCACTCAATGATGCGGATCAGATAGCCGAGCGGCTCCACCACGCGACGCA 2596 |||||| ||||||| | || ||||| ||||| || ||||| ||||| || |||| Sbjct 459 CGGTTTGAAACCACTCCACGACCTCGATCAAGTAGCCCAGTGGCTCAACCACACGGCGCA 518 Query 2597 GCGAGCCGATGGTGCCTTTATGCCGGTGAACGTATTCCGACGCGGCGACCACGCTGCGCT 2656 | | ||||||||||| || | ||| || | | ||||| | | | | | ||||| Sbjct 519 GGGCACCGATGGTGCCCTTGCGGGAGTGGACAAAGTACGACGAGCGAATCGCCCGGCGCT 578 Query 2657 TTGTGGCTTCCGGCCAGCTGGCATCCCAGCGGTCAACCGACCAGGCCCAGGCGAGATACG 2716 | ||| |||| ||| ||| |||||||| || | || | |||||||| || | | Sbjct 579 TGACGGCCTCCGACCAACTGCTGTCCCAGCGATCGATTGAAAACGCCCAGGCCAGGAAGG 638 Query 2717 GCAGCAGCTCAACCGGGCAGGTCTGCGCGTTCCACAGTTTGCGCAGCGGCACCGGAATGG 2776 |||||||| | || |||||| || | ||| ||| | ||| | ||||||||| | Sbjct 639 GCAGCAGCGCCACGGGGCAGCGCTCAGGGTTGATCAGGTCGCGGATCGGCACCGGTACAC 698 Query 2777 TTTCTATCTTCGCGCAGGCTTCAGCAGC 2804 || |||| || |||||||||| || Sbjct 699 GCTCGATCTGGGCCAAGGCTTCAGCCGC 726 Score = 96.9 bits (106), Expect = 7e-16 Identities = 403/621 (65%), Gaps = 14/621 (2%) Strand=Plus/Plus Query 3131 TGCACCGTGACGCGATCGGCCACCGGGCGCACGTTCTCATCGTTCAGCGCGGCATCCACC 3190 || || || | ||| |||||||| ||||| || ||| |||||||| | | |||| Sbjct 1048 TGAACGGTCAAGCGGTCGGCCACGGGGCGACGGTCCTCGTCGTTCAGGTAGCTACGCACC 1107 Query 3191 ACGGCCAGCAGGTCGGATGGGGCTTCGCCGTTACCCTCACGCGACA-GCACCGTGACGG- 3248 ||| |||||| | ||| |||| |||| |||| | |||| |||||| Sbjct 1108 GTGGCGAGCAGGGCTTCGTTGGCAGTACCGTC-CCCTTGCGCGGCCTGCACGGTGACGAC 1166 Query 3249 TGACGCAGGCGGGCGACGGGCTGATGGCCGAGGCATCCGCCACGCGGCCGTCGGCGCTTT 3308 || | | ||| || ||||||||| ||||| ||| ||||| || | |||||| ||| Sbjct 1167 TGCCAC-GGCCGGTGACGGGCTGTCGGCCGTGGCGTCCGCGACCCTGCCGTCAGCGGCGC 1225 Query 3309 TCGCATGATATTCGTAGGCACCGGTCGGCCCGGCCACGCTCAGCCCCTCAAAGGCAGACG 3368 || || | ||| || ||| ||||| ||||||||| || || || Sbjct 1226 GGGCGTGGAAGATGTAAGCGTTACGCGGGCCGGCGGTGCTCAGCCCTTCGAATGCCATTT 1285 Query 3369 CCACGCGCAGCCGGAAATCGTCGTTACTTTCCATCAC-TGCGGGCGTCGGCGGGATGG-- 3425 | ||||| || | |||||| |||||||| ||| ||||| || || | || Sbjct 1286 GCGCGCGCTCGCGCAGTGCGTCGTCACTTTCCAGCACCTGCGGTACA-GGTGGAACGGCC 1344 Query 3426 TGGTATTGTCGGCCGGGGTAAGTGTCAGGCGGGTAACGCCGTTGTTTGCGCCGAGCTGGT 3485 || || ||||| || |||||| | ||| | ||| | ||| ||||| Sbjct 1345 TGCGGCTG--GGCCGCCTGAATGACCAGGCGCTTGACGTTGAAGTTGCCCGCGACCTGGT 1402 Query 3486 CAAGGTCACCGTCACTGGCGTAGGCCACCATATTTGCCTGCGCCGCTTCATTCACGCGCT 3545 | ||||| ||| | ||| || | ||| || ||| |||||| || || |||| Sbjct 1403 CCAGGTCGTTGTCGCCGGCCGAGCTGAGCATCACCGCGAGCGACGCTTCGTTGACCCGCT 1462 Query 3546 GGCGCAGAATGACCTCGCGGTAGGCGTTTTCCTGTAACAGCTTCACAATCGGCTCAGACT 3605 | ||||| || | || ||||||||||| ||||| | || ||| || ||||| |||| Sbjct 1463 GACGCAGGATCATTTCCCGGTAGGCGTTCTCCTGCAGCAACTTGGTGATGGGCTCCGACT 1522 Query 3606 CCAGCGCCA-GCGTGCGGGCAATGGTCGCCTGCTGCTCAGCCGGGTAAAGCGAAATCAGC 3664 ||||| | | |||||| ||| || ||||||| || || || | || | | || Sbjct 1523 CCAGCTCAAGGCGTGC-GGCGATCTCGGCCTGCTCATCCGCAGGCCATAG-GCTGACGGC 1580 Query 3665 GT-GGCTTTGCGTTCGGCCAGCAGCGTTTCGTAATCCAGCACCTCAACCACATCGGGCGC 3723 | || ||||| ||||| || | | |||| | || | | ||| ||||| | ||||| Sbjct 1581 ATAAGCCTTGCGCTCGGCGAGGATCTGTTCGAAGTCGATCTGCTCGACCACCTGCGGCGC 1640 Query 3724 AGGCAGCTGGCTCAGGTCAAT 3744 |||||||| || ||||| || Sbjct 1641 GGGCAGCTGACTGAGGTCGAT 1661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94477645037412