Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 seq8 91.5 1e-13 >seq6 Length=53892272 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || || || || ||| ||| |||| || Sbjct 43309047 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 43309106 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || || | || | || ||||||| ||||| || || | || || || Sbjct 43309107 GACACAGTCGATAATGTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCAG 43309166 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| ||||| || |||||||| ||| |||||||||||||| Sbjct 43309167 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATAAC 43309226 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || || || || ||| |||| Sbjct 43309227 ATTCAGAAGGAGTCCACCCTCCACTTGGT 43309255 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || ||||| || || ||| || || Sbjct 13058878 AATGCAAATCTTTGTCAAGACTCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 13058819 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | || |||| || |||| || ||||| || || | ||| ||||| Sbjct 13058818 TGACACCATCGACAATGTCAAAGCGAAAATTCAG-GACAAGGAAGGCATTCCCCCAGATC 13058760 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||||| || || ||||| || || || | |||||| | ||| |||| ||||||| Sbjct 13058759 AGCAGAGGCTCATTTTTGCTGGGAAGCAGCTAGAAGATGGCAGGACTCTGGCAGATTATA 13058700 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| || |||||||| ||||| ||| |||| Sbjct 13058699 ACATCCAGAAAGAATCGACTCTTCACTTGGT 13058669 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || || || || || ||| ||| || Sbjct 13065598 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTTTGGAAGTGGAGAGCTC 13065539 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | || |||| || |||| || ||||| || || | ||| |||| Sbjct 13065538 TGATACCATCGACAATGTCAAAGCGAAAATTCAG-GACAAGGAAGGCATTCCCCCGGATC 13065480 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||||| ||||| ||||| || ||||| | || ||| || ||| |||| ||||||| Sbjct 13065479 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAGGATGGTAGGACTCTGGCAGATTATA 13065420 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| || ||||| || ||||| ||| |||| Sbjct 13065419 ACATCCAGAAAGAGTCGACTCTTCACTTGGT 13065389 >seq8 Length=74329289 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || ||||| ||||| || || |||| ||| Sbjct 36266964 AATGCAGATTTTTGTCAAGACTCTGACCGGTAAGACCATCACTCTTGAGGTGGAAAGTTC 36267023 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | || | ||| || ||| || || ||||| | || || || Sbjct 36267024 AGACACCATCGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCTCCGGACCA 36267083 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| || || ||| |||||||| | || ||||||||||||| Sbjct 36267084 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGATGGGAGGACACTGGCCGATTATAA 36267143 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 |||||| ||||| || ||||||||| Sbjct 36267144 CATTCAGAAAGAGTCGACTCTGCAC 36267168 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || |||| || || || || || ||| || || Sbjct 36266508 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 36266567 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | || |||| || |||| || ||||| || || | ||| ||||| Sbjct 36266568 CGACACCATTGACAATGTCAAAGCCAAAATTCAG-GACAAGGAAGGCATTCCCCCAGATC 36266626 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | || || ||||||||||| || |||||| | || ||| || ||| |||| ||||| | Sbjct 36266627 AGCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACA 36266686 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| || || || || ||||| ||| |||| Sbjct 36266687 ACATCCAGAAGGAGTCCACTCTTCACTTGGT 36266717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | || || || ||||| ||| ||| ||| ||| Sbjct 36265825 ATGCAAATTTTCGTGAAAACCCTTACTGGCAAGACCATCACCCTCGAGGTCGAAAGCTCA 36265884 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | || || ||| ||||| |||||| | ||| || || Sbjct 36265885 GACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAGGGAATCCCCCCTGACCAG 36265944 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || || | || ||| ||| |||| ||||||||| Sbjct 36265945 CAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAGGATGGACGCACTTTGGCTGATTATAAC 36266004 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || ||||| || || ||| |||| Sbjct 36266005 ATTCAGAAGGAATCCACCCTTCACTTGGT 36266033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425379130941429