Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1 120 4e-22 seq9 113 5e-20 seq6 107 2e-18 seq10 96.9 4e-15 >seq1 Length=40297282 Score = 120 bits (132), Expect = 4e-22 Identities = 298/446 (67%), Gaps = 10/446 (2%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTG-TGGATTTTCTCA 175249 |||||||| || |||| | ||||| | || ||| | | | || |||| ||||| | Sbjct 29952839 TGATGTTGCTGGTGTTGATGAGGCCAAGCAGGA-CTTCATGGAAGTGGTGGAGTTTCTAA 29952781 Query 175250 AGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGG 175309 || |||| ||||| | | || || ||| || ||||| || | |||||| | | Sbjct 29952780 AGAAACCTGAGAGGTTTACTGCAATTGGGGCTCGTATCCCTAAGGGTGTCCTTCTAGTTG 29952721 Query 175310 GTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCC 175369 || ||||| || ||||| || || || || || || || |||||| || ||| | Sbjct 29952720 GTCCTCCAGGAACTGGAAAAACGCTGCTTGCAAAGGCAATTGCTGGTGAAGCAGGTGTTC 29952661 Query 175370 CATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAA 175427 |||| || || | || | | | || || ||||||||||||||||| ||||| Sbjct 29952660 CATTTTTCTCCATT--TCAGGTTCTGAGTTCGTAGAGATGTTTGTTGGTGTTGGTGCTTC 29952603 Query 175428 AAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGA 175487 || ||||||||||| || | | ||| || ||| || || ||||| || |||| Sbjct 29952602 TAGAGTTCGCGATCTTTTCAAGAAGGCCAAAGAGAATGCTCCCTGCATTGTGTTTGTTGA 29952543 Query 175488 TGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAG 175545 ||| |||||||| |||||| ||| | | |||| | | | | || |||||| || Sbjct 29952542 TGAAATTGATGCTGTGGGCCGGCAGAGAGGAACTGGAATTGGAGG--AGGAAATGATGAA 29952485 Query 175546 AGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGC 175605 || || || || ||||||| || | || || |||||||| ||||| | || || Sbjct 29952484 AGGGAGCAGACCCTTAATCAGCTGTTGACAGAAATGGATGGTTTTGAAGGAAATACGGGT 29952425 Query 175606 ATTGTGGTTATTGCGGCCACTAATCG 175631 || | ||| |||| || ||||| || Sbjct 29952424 ATCATTGTTGTTGCAGCAACTAACCG 29952399 >seq9 Length=39018107 Score = 113 bits (124), Expect = 5e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||||| |||||||| | || || || || || ||||| |||||||||||||| Sbjct 26348049 TCCTTCGCGGAGCGCCTCCTCGCCTTCGCCTGCGTTGAGGGGATCTTCTTCTCCGGCAGC 26347990 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | ||| | ||||||||||| |||||||| || || |||||| || Sbjct 26347989 TTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGGCTCACCTTCTCGAAC 26347930 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || || || || ||||| |||||| Sbjct 26347929 GAGCTCATCTCTCGCGACGAGGGCCTCCAC 26347900 >seq6 Length=53892272 Score = 107 bits (118), Expect = 2e-18 Identities = 215/316 (68%), Gaps = 2/316 (1%) Strand=Plus/Plus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || || || |||||| ||| ||||| | ||| || || || || |||||||| Sbjct 15328932 GGGGCTAAAATCCCCAAAGGTTGTCTTCTTGTCGGTCCTCCCGGGACTGGGAAGACCCTT 15328991 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 | || | || | || ||||| | || |||||| || ||| | || | | Sbjct 15328992 TTGGCAAGGGCAGTGGCCGGTGAGGCTGGCGTGCCATTCTTCTCGTGTGCGGCATCCGAA 15329051 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||| ||||||| ||||| ||||| || ||| | || | ||||| | || Sbjct 15329052 TTTGTGGAGTTGTTTGTGGGTGTTGGTGCTTCGAGAGTTAGGGACTTGTTTGAGAAGGCG 15329111 Query 175456 C-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | ||| || || || ||||| || ||||||||||| ||||||||||| | ||| | Sbjct 15329112 AAGTCGAAAGCA-CCTTGCATTGTGTTTATTGATGAGATCGATGCGGTGGGGAGGCAGAG 15329170 Query 175515 CAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCAC 175574 | |||||| | || ||||| |||||||| ||||| || ||||| ||| | || Sbjct 15329171 AGGAGCTGGTCTTGGAGGAGGGAATGATGAGAGAGAGCAAACTATCAATCAGCTATTGAC 15329230 Query 175575 CGAGATGGATGGCTTT 175590 ||||||||||| ||| Sbjct 15329231 TGAGATGGATGGGTTT 15329246 >seq10 Length=39358841 Score = 96.9 bits (106), Expect = 4e-15 Identities = 243/361 (67%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAA--GTGGTGCCAAG-ATC 175287 ||||||||||| || || ||| | ||| |||| | |||| | |||| |||| ||| Sbjct 16066742 GAGATTGTGGAGTT-CTTAAGGACGCCG-GAGA-AGTTTGCAGCCGTGGGAGCAAGGATC 16066798 Query 175288 CCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCC 175347 || ||| | ||||| | ||| ||||| || || |||||| | | ||| || Sbjct 16066799 CCAAAAGGAGTTCTTCTAGTGGGGCCACCAGGGACAGGGAAGACCTTGTTGGCCAAGGCG 16066858 Query 175348 ATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATG 175407 ||||| || ||| | ||||| ||| | | |||| || | || | |||||| Sbjct 16066859 ATCGCAGGAGAAGCTGGGGTCCCTTTCTTTTCGCTGTCTGGGTCAGAGTTCATCGAGATG 16066918 Query 175408 TTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAA 175467 ||||| ||||| || | ||||| || || || ||| | | || | ||| Sbjct 16066919 TTTGTCGGTGTAGGCACTTCGAGGGTGCGAGACCTGTTTAACAAGGCGAAGGCGAATTCG 16066978 Query 175468 CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TG 175525 || || | ||||||||||||||||||||||| || || | ||| | | |||| | Sbjct 16066979 CCTTGCTTGGTCTTCATTGATGAGATTGATGCTGTTGGGAGGCAGAGAGGAACTGGCATC 16067038 Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 | | | || ||||||||||||||| |||||| | ||||| | ||||| |||||||| | Sbjct 16067039 GGAGG--AGGAAATGACGAGAGAGAGCAAACACTGAATCAGTTGCTCACTGAGATGGACG 16067096 Query 175586 G 175586 | Sbjct 16067097 G 16067097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596532679798880