Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq4951 464 2e-126 seq137 223 1e-53 seq104 215 2e-51 seq8 192 2e-44 seq11 116 1e-21 seq2 107 6e-19 seq846 95.1 4e-15 seq5 95.1 4e-15 >seq4951 Length=160137 Score = 464 bits (514), Expect = 2e-126 Identities = 697/985 (71%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 570 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 629 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || || || | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 630 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 689 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| |||||| | || || | | Sbjct 690 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 749 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| || ||||| || | |||||| || || ||| Sbjct 750 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAA 809 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || ||||| || |||||||| || Sbjct 810 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTT 869 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| || || | || || | ||| || | | ||||| ||||| Sbjct 870 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 929 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 930 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 989 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || ||||||||||| || || || || || || |||||||| Sbjct 990 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 1049 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||| ||||| ||||||||||| || || |||||||| ||||| |||||| ||||| Sbjct 1050 ATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAAAAACTTCCTTGA 1109 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | || || | ||||| || || ||| || | | || |||| |||||||||| Sbjct 1110 CCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1169 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | || || Sbjct 1170 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1229 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||| ||||| | | ||| || | ||| || ||||| ||||||| ||| Sbjct 1230 GCTACACCAAGTAAAAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCAT 1289 Query 26597 TCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| |||||||| || ||||||||||| | || || || ||| | Sbjct 1290 TCATCAACAGATGCC-GCTTCCCATATTGGGTAAAAATGCAAACCTATAGCTGCAGAAGT 1348 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||||||||| || | || || || ||||| || || Sbjct 1349 AGGAATAATGGCACCCGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTC 1408 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| |||||||| || || || || |||||||||| ||||| ||| | || Sbjct 1409 ACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATAATAAATACA-GAAG 1467 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| || ||||| | || || |||||||| | || |||||||| | Sbjct 1468 TTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTT 1527 Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859 | || || || | ||| | ||| || Sbjct 1528 CGGTGCTGGTTATCCAGTTACAGAA 1552 >seq137 Length=120145 Score = 223 bits (246), Expect = 1e-53 Identities = 297/413 (72%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 26006 TTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCA 26065 || |||||||||||||| || ||||| |||| |||||| | || || | | | || || Sbjct 113130 TTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACTAGATACCT 113071 Query 26066 ACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATAC 26125 || || ||||||| ||| || ||||| || | |||||| || || ||||| ||||| Sbjct 113070 ACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCATAT 113011 Query 26126 TGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCT 26185 || || || |||| ||||| || || || ||||| || |||||||| || ||||| ||| Sbjct 113010 TGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCCTCT 112951 Query 26186 TGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAG 26245 || || || | || || | ||| || | | ||||| ||||| || | Sbjct 112950 TGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTA 112891 Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACA 26305 || || ||||| || ||||||||| ||| || | || ||||| || ||||| || Sbjct 112890 GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACG 112831 Query 26306 CCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAG 26365 || ||| || ||||||||||| || ||||| || || || |||||||| | ||| ||| Sbjct 112830 CCTAACATGTGAAATGGGTGCATAAGGATATTGTGCTCAGCCTGGAATACAATCATGAAG 112771 Query 26366 TTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCC 26418 || ||||||||||| || || |||||||| |||| |||||| ||||| || Sbjct 112770 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATTCGAAAAACTTCCTTGACC 112718 >seq104 Length=304272 Score = 215 bits (238), Expect = 2e-51 Identities = 434/644 (67%), Gaps = 0/644 (0%) Strand=Plus/Plus Query 25876 TGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTT 25935 ||||| ||| || | |||||||||||||||||||| ||||||||||| | || ||||| Sbjct 122311 TGCTAGGTCTAGAGTGAAGTTATGAGCATTACGCTCATGCATAACTTCCATACCAAGGTT 122370 Query 25936 AGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGA 25995 || || || | | || ||| || ||| |||| | || | | |||| |||| || Sbjct 122371 AGTACGATTAATAATATTAGCTCAAGTATTAATTACATGACCTTGACCATCAACTATGGA 122430 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || |||||||||||||| || ||||| ||| ||||| | || || | Sbjct 122431 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAATGCTAATACCTAAAGCAGTGAA 122490 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 | | || | || || |||||| ||| | ||||| || | |||| | || ||||| Sbjct 122491 CTAGATATCTACTACGAGCCAAGCAGCTAAGAAGAAGTGTAAAGAATGAGAATTGTTAAA 122550 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| | ||| |||||||| ||| ||| || || || ||||| ||||||||||| || Sbjct 122551 ACTAGTATATTGAAAAATCAATTAGTGAAAATAACCATGAGCAGCTACAATATTATAAGT 122610 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 ||||| ||||| | || |||| || | ||| || | | | ||| ||||| Sbjct 122611 TTCTTCCTCTTGATCGAATCTATAACCTTCATTAGAAGATTCATTTTTTGTGGTTTCCAT 122670 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || || || || ||||||||| ||| | | ||||| || || Sbjct 122671 TATCAAACTAGAGGTTACTAAGGAACCATGCATAGCACTGAATAAGGAGCCACCAAATAC 122730 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||| | | || ||| || ||| |||| | || || || | || || | ||| | Sbjct 122731 ACCAACCATGCCTAACATGTGAAATTGGTGTGTAAGGATGTTGTACTCAGCCTATAATGC 122790 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 || ||| | | ||||||| ||| || | | |||||| ||||| |||||| ||||| Sbjct 122791 GATCATGGAAATGAAAGTACTAGAAATTCATAAAGGCATACCATCCAAAAAACTTCCTTG 122850 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | || || | ||||| || | ||| || | | || |||| ||| ||||| Sbjct 122851 ACCAATTGGGTAGATCAAGAAAACAATGGTAGCAGCTGCAACAGGAGCTGAATAAGCAAC 122910 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACT 26519 || ||||| || | ||| || || | | || |||||||||| Sbjct 122911 AACAATCCAAGGGCACATACCCAGACGGAAACTAAGTTCCCACT 122954 >seq8 Length=74329289 Score = 192 bits (212), Expect = 2e-44 Identities = 382/565 (68%), Gaps = 12/565 (2%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||| | || ||||||||||| | || |||||| Sbjct 23726506 GCTAGGTCTAGAGGGAAGTTATGAGCATTATGTTCATGCATAACTTCCATACCAAGGTTA 23726565 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || || || | | || |||||| ||| |||| || | | ||| ||||| | Sbjct 23726566 GCACGATTAATAATATTAGCCCAAGTATTAATTACACGACCTTGACCATTAACTACAAAT 23726625 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||||||||||| || || ||||| |||| ||||| | || || | | Sbjct 23726626 TGGTTGAAATTGAAACCATTTAGTTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 23726685 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||||||| | ||||||| | | || | || |||||| Sbjct 23726686 CAGATACCTACTACGGGCCAAGTAGCTAAGAAGAAATATAAACAATGAGAATTGTTAAAA 23726745 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || | ||| ||||| || ||| || || || || ||||| ||||||||||| || Sbjct 23726746 CTAGTATATTGAAAGATCAATTAGTGAATATAACCATGAGCAGCTACAATATTATAAGTT 23726805 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| | || | || || | ||| || | | | ||| ||||| || Sbjct 23726806 TCTTCCTCTTGACTGAATGTGTAACCTTCATTAGCAGATTCATTTTATGTGGTTTCCCCA 23726865 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCC--GTGCATAGCAGCGAAAAGAGCTCCACCGAAAA 26294 || | || || |||| || ||| || || ||| || |||| | Sbjct 23726866 ATCAAACTAGAGGTTACCAGGGAACCATGTGAAT--------AAGGAG--CCGTCGAATA 23726915 Query 26295 CCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATA 26354 | | ||| | ||| || ||||||||||| || ||||| | | ||||| |||| Sbjct 23726916 CACTAGCTGTGTCTAACATGTGAAATGGGTGCATAAGGATATTGTACTTAGCTTGTAATA 23726975 Query 26355 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTT 26414 | | || ||||| ||||||||||| || | | |||||| ||||| |||||| |||| Sbjct 23726976 CAATTATGAAGTTGAAAGTACCAGAAATTCATAAAGGCATACCATCCGAAAAACTTCCTT 23727035 Query 26415 GTCCGAAAGGATAAACTAAGAACAC 26439 | || | || || | ||||| || Sbjct 23727036 GACCAATTGGGTAGATCAAGAAAAC 23727060 >seq11 Length=45509462 Score = 116 bits (128), Expect = 1e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 25984 ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 ||| ||||| || ||||| || || |||||||||||||| || ||||| |||| |||||| Sbjct 27046646 ATCAACTACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 27046587 Query 26044 CATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACG 26103 | || || | ||| || || || || ||||||| ||| || ||||| || | |||||| Sbjct 27046586 TAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACG 27046527 Query 26104 GCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGC 26157 || || ||||| ||||| || || || |||| ||||| || || || || Sbjct 27046526 AGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGC 27046473 Score = 109 bits (120), Expect = 2e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 26285 CCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCT 26344 || ||||| || ||||| || || ||| || ||||||||||| || || || || || Sbjct 19769192 CCGCCGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCA 19769133 Query 26345 GCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTA 26404 || |||||||| | ||| ||||| ||||||||||| || || |||||||| ||||| | Sbjct 19769132 GCCTGGAATACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCCGAA 19769073 Query 26405 AAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGC 26442 ||||| ||||| || | || || | ||||| || || Sbjct 19769072 AAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGC 19769035 >seq2 Length=64235786 Score = 107 bits (118), Expect = 6e-19 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 25984 ATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 ||| ||||| || ||||| || || |||||||||||||| || ||||| |||| |||||| Sbjct 43659107 ATCAACTACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 43659048 Query 26044 CATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACG 26103 | || || | ||| || || || || ||||||| ||| || ||||| || | |||||| Sbjct 43659047 TAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACG 43658988 Query 26104 GCTGTTATTAAAACTCGCATACTGAAAAA 26132 || || ||||| ||||| || |||| Sbjct 43658987 AGAATTGTTGAAACTAGCATATTGGAAAA 43658959 >seq846 Length=16005 Score = 95.1 bits (104), Expect = 4e-15 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 26318 AATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCA 26377 |||||||| || || || ||||| || |||||||| || | ||| ||||| ||||||||| Sbjct 1794 AATGGGTGTATAAGGATGTTATGCTCAGCTTGGAAGACAATCATGAAGTTGAAAGTACCA 1853 Query 26378 GAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAAC 26437 || || || |||||||| | || |||||| |||| || | | || | ||||| Sbjct 1854 GAAATTCCTAGAGGCATACAATTCGAAAAACTTCCTTAACCAATTAGGTAGATCAAGAAA 1913 Query 26438 ACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCT 26497 | || | ||| | | | || | || ||||||||||| ||||| || ||| ||| Sbjct 1914 ATAGCAATAGCAGTTGCAACGGGAGATGAATATGCAACAACAATCCAAGGGTACATACCT 1973 Query 26498 AGTCTGTAAGATAGTTCCCACT 26519 || | || |||||||||| Sbjct 1974 AGATGGAAACTAAGTTCCCACT 1995 >seq5 Length=74729908 Score = 95.1 bits (104), Expect = 4e-15 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 25917 TAACTTCAAAGCCGAGGTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTC 25976 ||||||| | || |||||||| || || | | ||||||||| ||| |||| | Sbjct 13157356 TAACTTCCATACCAAGGTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGAC 13157415 Query 25977 CATTAACATCTACTACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGC 26036 | | | ||| |||| || ||||| || || |||||||||||||| || ||||| |||| Sbjct 13157416 CTTGACTATCAACTAGGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGC 13157475 Query 26037 AGATACCCATAGATGTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAA 26088 |||||| | || || | ||| || || || || ||||||| ||| || || Sbjct 13157476 TGATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAA 13157527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147703315549920