Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq8 87.8 3e-12 seq6 84.2 4e-11 >seq8 Length=74329289 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || | |||| || | |||||| ||| ||||| |||| | || || | Sbjct 36267179 CGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAATGTTATAATCGGCCAGTGTCCTCCCA 36267120 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| || ||||||||||| | ||||| || || ||||| || || || ||| Sbjct 36267119 TCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTA 36267060 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| || || || ||| || || || ||||| || Sbjct 36267059 TCCTGGATCTTCGCCTTCACATTGTCGATGGTGTCTGAACTTTCCACCTCAAGAGTGATG 36267000 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || || || ||||| || |||||| Sbjct 36266999 GTCTTACCGGTCAGAGTCTTGACAAAAATCTGCATT 36266964 >seq6 Length=53892272 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || || || | || || |||| || | || | ||| || ||| ||| Sbjct 43309510 ATTTGCATGCCTCCCCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTA 43309451 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | ||| || || || | || ||||| |||||||| | ||||| || Sbjct 43309450 TAGTCTGCAAGCGTCCTCCCGTCTTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGG 43309391 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || ||||| || || | || | ||| ||| || || || Sbjct 43309390 TCCGGTGGAATACCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAG 43309331 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||||| || || || || || || || || || ||||| |||||||| Sbjct 43309330 CTCTCAACTTCTAGGGTAATTGTCTTCCCAGTGAGAGTCTTCACAAAGATTTGCAT 43309275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899598722638320