Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq6 113 9e-20 seq8 95.1 2e-14 >seq6 Length=53892272 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || ||||| | || | ||| || ||| ||||||||| Sbjct 13065824 ATGCCACCTCTCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGGATGTTATAATCA 13065883 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || ||| |||| || | || || ||||||||||| | ||||| || || || Sbjct 13065884 GCCAAGGTGCGTCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGG 13065943 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || || || ||||| || | ||||| ||| Sbjct 13065944 GGGATTCCCTCCTTATCTTGAATCTTGGCCTTAACATTGTCAATTGTGTCTGAGCTTTCG 13066003 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || ||||| | || || | ||| |||||||| Sbjct 13066004 ACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 13066053 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||| | || || || | || | || || ||| ||||||||| Sbjct 13059104 ATCCCACCTCTCAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTATAATCA 13059163 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || ||| |||| || | || || ||||||||||| | ||||| || || || Sbjct 13059164 GCCAAAGTGCGTCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGG 13059223 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || || ||| ||||| || | ||||| ||| Sbjct 13059224 GGGATTCCCTCCTTGTCTTGAATCTTGGCTTTAACATTGTCAATTGTGTCTGAGCTTTCA 13059283 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || ||||| | || || | ||| |||||||| Sbjct 13059284 ACCTCAAGTGTAATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 13059333 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || ||||| | || | ||| || || ||||||||| Sbjct 13066052 ATGCCACCTCTCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGAATGTTATAATCA 13066111 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || ||| |||| || | || || || |||||||| | ||||| || || || Sbjct 13066112 GCCAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGG 13066171 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || || |||||||| || | || || ||| Sbjct 13066172 GGGATTCCCTCCTTGTCTTGAATCTTGGCCTTTACATTGTCAATTGTGTCCGAGCTTTCA 13066231 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || ||||| | || || | |||||||||||| Sbjct 13066232 ACCTCGAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 13066281 Score = 84.2 bits (92), Expect = 4e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || || | ||||| | |||| || | |||||||||||||||||| | || Sbjct 43309913 GATGTTGTAGTCGGCCAATGTCCTGCCATCTTCAAGTTGTTTACCAGCAAAGATCAGCCT 43309854 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 || || || || || || || ||||| || || |||||| || ||||| | || Sbjct 43309853 TTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGAATTTTAGCCTTCACATTGTCGACAGT 43309794 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || ||| || || |||||||| || || ||||| | || || | || ||||| Sbjct 43309793 ATCAGAGCTTTCGACCTCAAGAGTAATCGTCTTCCCAGTGAGAGTCTTCACGAAAATCTG 43309734 Query 192534 CATT 192537 |||| Sbjct 43309733 CATT 43309730 >seq8 Length=74329289 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || || || | || | || || ||| || || || Sbjct 36266282 ATGCCACCTCTGAGACGAAGCACCAAGTGGAGTGTTGATTCCTTCTGGATGTTGTAGTCC 36266223 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | ||| || || || || || || ||||| ||||| || Sbjct 36266222 GCCAGAGTTCGGCCATCCTCAAGTTGCTTGCCCGCGAAAATCAACCTCTGCTGATCTGGG 36266163 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || ||||| ||||||||| || | || || ||| Sbjct 36266162 GGAATTCCTTCCTTGTCCTGGATTTTCGCCTTTACATTATCGATGGTGTCCGAACTTTCA 36266103 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| || || ||||| | || || | |||||||||||| Sbjct 36266102 ACCTCTAGGGTAATCGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 36266053 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || || || | || | || || || ||||||||| Sbjct 36266054 ATGCCACCCCTGAGACGGAGAACCAAGTGAAGGGTGGATTCCTTCTGAATGTTATAATCA 36265995 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || ||| |||| || | || || ||||||||||| | ||||| || ||||| Sbjct 36265994 GCCAAAGTGCGTCCATCCTCAAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCAGGG 36265935 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || || ||| ||||| || | ||||| ||| Sbjct 36265934 GGGATTCCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCTGAGCTTTCG 36265875 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | || || ||||| Sbjct 36265874 ACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACGAAAATTTGCAT 36265825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984417549818850