Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 3e-12 >seq6 Length=53892272 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||||||||||||||| || | || || ||||| || || || || ||||| Sbjct 43309885 TCTTCAAGTTGTTTACCAGCAAAGATCAGCCTTTGCTGGTCCGGAGGAATACCCTCTTTG 43309826 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || |||||| || ||||| | |||||| || ||| || || |||||||| Sbjct 43309825 TCCTGAATTTTAGCCTTCACATTGTCGACAGTATCAGAGCTTTCGACCTCAAGAGTAATC 43309766 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||| | || || | ||| ||||||||| Sbjct 43309765 GTCTTCCCAGTGAGAGTCTTCACGAAAATCTGCATT 43309730 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| || || | || ||||| | || | ||| || ||| |||||||| Sbjct 13066052 ATGCCACCTCTCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGAATGTTATAATCA 13066111 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | || || || ||||| || | ||||| ||||| || Sbjct 13066112 GCCAGGGTGCGTCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGG 13066171 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || ||||| || || |||||||| || || || || ||| Sbjct 13066172 GGGATTCCCTCCTTGTCTTGAATCTTGGCCTTTACATTGTCAATTGTGTCCGAGCTTTCA 13066231 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || |||||||| || ||||| | || || | ||||||||||| Sbjct 13066232 ACCTCGAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAATATCTGCAT 13066281 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| || ||||| || ||||| | |||||||||||| ||||| || || || || Sbjct 43310113 TCCTCCAGCTGCTTACCGGCGAAAATCAGTCTCTGTTGGTCCGGTGGGATCCCCTCCTTG 43310054 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || || |||||| ||||| ||||| || || || | || ||| Sbjct 43310053 TCTTGGATCTTTGCCTTAACATTATCAATAGTGTCTGAACTCTCAACCTCCAAGGTGATG 43309994 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| || || | || || | ||| ||||||||| Sbjct 43309993 GTTTTTCCTGTCAGGGTCTTGACGAAAATCTGCATT 43309958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905079983395800