Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 134 4e-26 seq6 129 2e-24 seq1 113 1e-19 seq5 104 7e-17 seq8 84.2 6e-11 >seq9 Length=39018107 Score = 134 bits (148), Expect = 4e-26 Identities = 219/313 (70%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| || |||||| ||| | ||| || | ||| ||||| ||||| ||| || || Sbjct 33619245 CATAATATCCTCCATAGCCTTCACTAATCGCCTCTGGATATATCCAGTCTCAGAAGTCTT 33619304 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| | | |||||||||||||||||| || | ||| | ||| Sbjct 33619305 GACAGCAGTATCAATCAGACCTTCCCTACCACCCATAGCATGGAAAAAGAACTCCTGCGG 33619364 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | ||| | || | | ||| |||| || || ||||| || ||| || || Sbjct 33619365 AGTCAACCCACGAAGATACGAGTTCTCGACAAATCCACGACTTTCTGGCCCATAATCATC 33619424 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCT-CATAGCCGTATGGGATACGCTTTCCATCAA 302803 || || || || ||||| || | | || | | || | || || ||||| || |||| Sbjct 33619425 TTTTGTGAAATGGGGCAGAGTTC-GACCTATAAATCCAAACGGTATCCGCTTACCCTCAA 33619483 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGC 302863 | |||||||| || | || | | |||||||||||||||| | ||| ||||| || | Sbjct 33619484 CATTCTGCTGACCAACACAAGCAGTCATCTGCGAAATATTGATGAAACTTCCCTTAGATC 33619543 Query 302864 CAGCATTTACCAT 302876 |||| | ||||| Sbjct 33619544 CAGCTGTAACCAT 33619556 >seq6 Length=53892272 Score = 129 bits (142), Expect = 2e-24 Identities = 219/314 (70%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| || |||||| ||| | ||| || | ||| ||||| ||||| ||| || || Sbjct 20072752 CATAATATCCTCCATAGCCTTCACTAATCGCCTCTGGATATATCCAGTCTCAGAAGTCTT 20072811 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| | | |||||||||||||||||| || | ||| | || Sbjct 20072812 GACAGCAGTATCAATCAGACCTTCCCTACCACCCATAGCATGGAAAAAGAACTCCTGTGG 20072871 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | ||| | || | | ||| |||| || || |||| || ||| || || Sbjct 20072872 AGTCAACCCACGAAGATACGAGTTCTCGACAAATCCACAACTTTCTGGCCCATAATCATC 20072931 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCATAGCCGTATGGGATACGCTTTCCATCA 302802 || || || || ||||| || | | || | | | || | ||||| ||||| || ||| Sbjct 20072932 TTTTGTGAAATGGGGCAGAGTTC-GATCGATGA-ATCCAAACGGGATCCGCTTACCCTCA 20072989 Query 302803 ACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAG 302862 || |||||||| || | || | | ||||||| |||||||| | ||| ||||| || Sbjct 20072990 ACATTCTGCTGACCAACACAAGCAGTCATCTGAGAAATATTGATGAAACTTCCCTTAGAT 20073049 Query 302863 CCAGCATTTACCAT 302876 |||||| | ||||| Sbjct 20073050 CCAGCAGTAACCAT 20073063 Score = 91.5 bits (100), Expect = 4e-13 Identities = 349/540 (65%), Gaps = 20/540 (4%) Strand=Plus/Minus Query 288817 CCAGATACATCAGGCAAACCCACCCGCACCCTCCTATCAAACCTACCAGAACGAGTTAAT 288876 |||| ||||||||| | |||| ||| || ||||||||| |||| | || Sbjct 15329368 CCAGCGACATCAGGCCTATCCACGGTGACCTGCCGATCAAACCTCCCAGGTCTCAACAAA 15329309 Query 288877 GCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGCCAATAC---AACAATAGATTCGGTT 288933 |||| || | | ||| | ||||| || ||||||||||| ||| ||| | | Sbjct 15329308 GCTGAATCAAGAACATCTGGCCTGTTCGTAGCTGCCAATACTATGACACCAGAAT---TC 15329252 Query 288934 TGCTTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTT 288993 | ||| |||||||| || || | ||||| | ||||| || || |||||||| Sbjct 15329251 CCCGAAAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATT- 15329193 Query 288994 GAACCTCTTGAATCACCCGAATCGCTCCttttt--ttACCAACAGCATCAATTTCGTCAA 289051 |||| | | ||| |||||| | | | || || ||||| || || |||| Sbjct 15329192 --CCCTCCTCCAAGACC-----AGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAA 15329140 Query 289052 TGAAAATCACACACGGAGAATTTTGTC-TCGCAATTGCAAATAATTCTCTTACACGGGAT 289110 | || | | || || | ||| | | |||| | |||| || || || || | || Sbjct 15329139 TAAACACAATGCAAGGTG-CTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAA 15329081 Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAG-CGGATACTTGAATGAATGTTAC 289169 || |||| ||| ||| ||| || |||||||| || | || | || ||| ||||| || Sbjct 15329080 GCACCAACACCCACAAACAACTCCACAAATTCGGATGCCGCACACGAGAA-GAATGGCAC 15329022 Query 289170 ATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTC 289229 || || || || |||||||| |||| ||| ||||| || || || || || || | Sbjct 15329021 GCCAGCCTCACCGGCCACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGGAGGACCGAC 15328962 Query 289230 TAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAA 289289 | ||| || || || | ||| ||||| || | || || |||||| |||| || Sbjct 15328961 AAGAAGACAACCTTTGGGGATTTTAGCCCCCAAAGCGGTGTACTTATCAGGGTTCTTCAA 15328902 Query 289290 AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 || || || | || | | ||| |||| || | |||| || |||||||| ||||| Sbjct 15328901 GAAATCAACCACCTCTTGCAATTCCAATTTGGCTTGATCAGCCCCAGCTACATCGGCAAA 15328842 >seq1 Length=40297282 Score = 113 bits (124), Expect = 1e-19 Identities = 321/478 (67%), Gaps = 34/478 (7%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAAT-AGATTCGG-TTTGCTT-AAATCCA 288945 || || || | ||| |||||||| | ||||||| | | || ||| ||| ||| ||| Sbjct 29952390 ATGTCTGCACGGTTAGTTGCTGCAA---CAACAATGATACCCGTATTTCCTTCAAAACCA 29952446 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| ||| || | |||||||| || || ||||||||||||||| |||| | Sbjct 29952447 TCCATTTCTGTCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTT---CCTCCT--- 29952500 Query 289006 TCACCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCAC 289061 || | || | |||| | | || |||||||||||||| |||| || | | Sbjct 29952501 ----CCAATTCCAGTTCCTCTCTGCCGGCCCACAGCATCAATTTCATCAACAAACACAAT 29952556 Query 289062 ACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 || |||| ||| | | | || ||| ||| | || | || | || || |||| | Sbjct 29952557 GCAGGGAGCATTCTCTTTGGCCTTCTTGAAAAGA--TCGCGAACTCTAGAAGCACCAACA 29952614 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTC 289178 |||||| |||| ||||| || |||||| | || | | || | |||| ||| |||||| Sbjct 29952615 CCAACAAACATCTCTACGAACTCAGAACCTGA-AATGGAGAAAAATGGAACACCTGCTTC 29952673 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || || | |||| | || || || || || || ||||| || || || ||| || || Sbjct 29952674 ACCAGCAATTGCCTTTGCAAGCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGAC 29952733 Query 289239 TCCCTTTGGTACTTTTGCCCCA---GCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295 ||||| || | |||||| |||| || | ||||||| |||||| ||| || Sbjct 29952734 ACCCTTAGGGATACGAGCCCCAATTGCAG---TAAACCTCTCAGGTTTCTTTAGAAACTC 29952790 Query 289296 TACAATTTCC-TCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || | |||| | ||| || | || ||||||||| || || |||||| |||| || Sbjct 29952791 CACCACTTCCATGAAG-TCCTGCTTGGCCTCATCAACACCAGCAACATCATCAAATGT 29952847 >seq5 Length=74729908 Score = 104 bits (114), Expect = 7e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 |||||||||||| || || |||||| | |||| | | || ||||| || ||| Sbjct 56197161 ACACACATGGACTCTATACGCATCACTTTGGTCAAACAACCTCTCCTTGAGAAAATGAGC 56197102 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 || || || | |||||| ||||| | ||||| || || || || ||||||||||| || Sbjct 56197101 GGCTCCATGAGCAATCATGCAATCTCTTTCCATCTCTCCAAATCGGAGACCACCATCTCG 56197042 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 || | |||||||||||||| | || ||| | || |||||| ||| ||| Sbjct 56197041 AGATCGTCCCTCGGCAGGCTGCCTTGTAAGAATTTGCACAGGACCCCGACCACGGGAATG 56196982 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 |||||||| ||||| |||||||| | ||| || ||| ||||| | ||| || Sbjct 56196981 GATCTTATCATCCACCATGTGCTTGAGTCTCTGATAATATGTTGGACCCAGGAAAAT 56196925 >seq8 Length=74329289 Score = 84.2 bits (92), Expect = 6e-11 Identities = 154/225 (68%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 156044 AAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGAC 156100 |||| ||| || |||||||||||| ||||||||||| ||||| || | ||| || || Sbjct 69479643 AAAATCACCTTTTCTCTTGCCACCCCCTTGATCTACATAACGAGCTGTATCATTAAATAC 69479702 Query 156101 ACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGA 156160 | | ||| |||| ||| |||||||| || ||||| || || || || | ||||| Sbjct 69479703 TCGCAACATCGGAACAATGCCATTGGATGTTCCATTCGTCCCACGTATGTAACTACCAGT 69479762 Query 156161 TGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCA 156220 | || | |||||||| | || ||||| || || | |||| || ||| || Sbjct 69479763 GGCACGGATATTATGAACAGATACACCAATCCCTCCAGCTGATTTGCTGATAACAGCACA 69479822 Query 156221 TTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || | |||| | || || |||||| ||| |||| ||| Sbjct 69479823 CTCTTTCAAGGTATCATATATGCCCTCAATACTATCTTCTTTCAT 69479867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471724235710487