Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq9 259 6e-63 seq10 120 4e-21 seq2 120 4e-21 seq1766 111 2e-18 seq626 111 2e-18 seq11 87.8 2e-11 seq8 86.0 8e-11 >seq9 Length=39018107 Score = 259 bits (286), Expect = 6e-63 Identities = 244/311 (78%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| ||||| | |||| | | ||| Sbjct 26348186 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCCGAGAGCTGG 26348245 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| ||| |||| ||||||||| |||||||||||| ||||||||| Sbjct 26348246 ACCTCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 26348305 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||| ||| |||||||||||| ||||| |||| | |||||||| | Sbjct 26348306 AAGGCGAGCACGTGGGTGACGAAGTGGCGCTCGCCGTCGGTGAGGCCCTCCCAGTGGCGG 26348365 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| | |||||| ||||||||||||||||||| |||||||| |||| |||||| Sbjct 26348366 AGGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCCGCCTGCTTGTAC 26348425 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGC 869932 |||||||| | ||| |||| |||||||||| | | ||||||| ||||| | | Sbjct 26348426 ATCTCCCAGATCTGCGGGTACTGGATAGGGAACATGCAGAAGCGGTCCGGGTTCGGGGCC 26348485 Query 869933 AACAGGGGTTC 869943 | |||||| || Sbjct 26348486 AGCAGGGGCTC 26348496 Score = 190 bits (210), Expect = 2e-42 Identities = 206/272 (76%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||||||| ||| | ||||| |||| ||| || ||||||||||| |||||| Sbjct 26347907 CCCTCGTCGCGAGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCCCGCTTC 26347966 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| |||||||||||||| ||||| ||||| ||||| ||||| ||| ||| ||| Sbjct 26347967 TTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCAACGCAGGCGAAG 26348026 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| ||| ||||| || |||| || ||| || || |||||| | |||||| Sbjct 26348027 GCGAGGAGGCGCTCCGCGAAGGACTC----CCCGCC--GTCGATCCAGCGGAGGGCCCAG 26348080 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCG 869419 |||||||| || | ||| || ||||||| |||||| |||||| ||||||| ||| Sbjct 26348081 TCGGCCTTGCGGGCGACGGCCGGGACGGTGTCGACGGCGCGGAAGAGGCGGTCCTTCTCG 26348140 Query 869420 GCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || | ||||||||| ||||| || | ||||| Sbjct 26348141 GCGGAGTCCTTGACGTAGGTCTCCAGTAGGAG 26348172 Score = 185 bits (204), Expect = 1e-40 Identities = 230/314 (73%), Gaps = 6/314 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || ||| |||||| ||||||||||| |||| |||||||| Sbjct 26347592 GCCTTCTGGTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATG 26347651 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| ||||||||| | | | ||| ||| |||| ||||||| || Sbjct 26347652 AGCTCCATCCAGTCGAACGGGTTCGTCACGTCGTACACCTTGCCGCAGCCGAGCGCGCCG 26347711 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || ||||||||||| |||||||||||||||| ||| ||| || |||||| || | Sbjct 26347712 AGAAGCCGGTCGGCGACGAACTCGATGTACTGGCCCATCAGGTCGCTGTTCATCCCAACC 26347771 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC---GACG 868927 || || |||||||| |||| || ||||| |||||| ||||||||||| ||| Sbjct 26347772 AGGGCGCACGGCAGCGCGTCGCAGACGAACTCCCGCTCGATGTCGACGGCCTCCCGCACG 26347831 Query 868928 ATGATCTGCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 || || | || | ||| | |||||||| |||| || |||||| |||||| Sbjct 26347832 ATCCCCTTCACCCGCTCCTCGCTC---GGCTTGTTCCGCAGCAGCGAGTAGAGGAGGCAG 26347888 Query 868988 GCAAAGTCGCAGTG 869001 || ||||||||||| Sbjct 26347889 GCGAAGTCGCAGTG 26347902 >seq10 Length=39358841 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || ||||| ||||||||||||||||| || | | || Sbjct 26613947 GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGCGGTCTGGATCTCCCGGGAGGTGA 26614006 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || ||| || ||| | ||| |||| | Sbjct 26614007 TGGTGGGCTTCTTGTTGTAGCGGGCGAGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGA 26614066 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||| | |||| ||||||| || | ||| |||| Sbjct 26614067 TGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGGT 26614126 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| ||||||||| ||||| Sbjct 26614127 GCACCTGCTTCAGCACCTTGAAGATG 26614152 Score = 104 bits (114), Expect = 3e-16 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| ||| | ||||| ||||| ||||||||||| || | | || Sbjct 3820661 GCTTGGCGAGCTCCCCGGGCAGCACGAGGCGGACGGCCGTCTGGATCTCCCGGGAGGTGA 3820720 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACG-GCCGGCCTCGGTGCC-GATGCGGTCGAT 1254460 | ||| |||||| | ||||||| || | || | | | ||| | | | |||| Sbjct 3820721 TGGTGGGCTTCTTGTTGTACCGCGCCAGCCGCGACGACTCCTGGGCCAGCTTC--TCGAA 3820778 Query 1254461 CATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 |||||||||| || |||||||| | ||||| |||| | |||||||| | ||| || Sbjct 3820779 GATGTCGTTGATGAAGCTGTTCATGATCCCCATCGCCTTGCTCGAGATGCCGATGTCCGG 3820838 Query 1254521 GTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||| |||||||| ||||||||| ||||| Sbjct 3820839 GTGGACCTGCTTCAGCACCTTGAAGATG 3820866 Score = 87.8 bits (96), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1254456 TCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACG 1254515 |||| |||||||||| || |||||||||| ||| | |||| ||||||| || | | Sbjct 26637515 TCGAAGATGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATCCCGATG 26637574 Query 1254516 TCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 || |||||||||||||| ||||||||| ||||| Sbjct 26637575 TCAGGGTGCACCTGCTTCAGCACCTTGAAGATG 26637607 >seq2 Length=64235786 Score = 120 bits (132), Expect = 4e-21 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| || ||||| |||||||||||||| || || | | || Sbjct 63168842 GCTTGGCCAGCTCCCCGGGCAAGACGAGGCGGACGGCGGTCTGGATTTCCCGGGAGGTGA 63168901 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || ||| || ||| | ||| |||| | Sbjct 63168902 TGGTGGGCTTCTTGTTGTAGCGGGCGAGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGA 63168961 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||| | |||| |||||||||| | ||| |||| Sbjct 63168962 TGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATGCCGATGTCCGGGT 63169021 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||| ||||||||| ||||| Sbjct 63169022 GGACCTGCTTCAGCACCTTGAAGATG 63169047 >seq1766 Length=8545 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || || || ||||||||||||||||| || | | || Sbjct 1860 GCTTGGCGAGCTCGCCGGGGAGGACGAGCCGGACGGCGGTCTGGATCTCCCGGGAGGTGA 1801 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || ||| || ||| | ||| |||| | Sbjct 1800 TGGTGGGCTTCTTGTTGTAGCGGGCGAGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGA 1741 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || || ||||||| ||| | |||| ||||||| || | ||| |||| Sbjct 1740 TGTCGTTGATGAAGGAATTCATGATGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGGT 1681 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| ||||||||| ||||| Sbjct 1680 GCACCTGCTTCAGCACCTTGAAGATG 1655 >seq626 Length=20894 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| | | || || || ||||||||||||||||| || | | || Sbjct 12048 GCTTGGCGAGCTCGCCGGGGAGGACGAGCCGGACGGCGGTCTGGATCTCCCGGGAGGTGA 12107 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| || | || || ||| || ||| | | | |||| | Sbjct 12108 TGGTGGGCTTCTTGTTGTAGCGGGCGAGGCGGGAGGACTCCTGGGCAAGCTTCTCGAAGA 12167 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||| | |||| ||||||| || | ||| |||| Sbjct 12168 TGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGGT 12227 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| ||||||||| ||||| Sbjct 12228 GCACCTGCTTCAGCACCTTGAAGATG 12253 Score = 87.8 bits (96), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1254456 TCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACG 1254515 |||| |||||||||| || |||||||||| ||| | |||| ||||||| || | | Sbjct 2032 TCGAAGATGTCGTTGATGAAGGAGTTCATGATGCCCATGGCCTTGCTGGAGATCCCGATG 2091 Query 1254516 TCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 || |||||||||||||| ||||||||| ||||| Sbjct 2092 TCAGGGTGCACCTGCTTCAGCACCTTGAAGATG 2124 >seq11 Length=45509462 Score = 87.8 bits (96), Expect = 2e-11 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||| | ||||||| |||||||||| |||| || || | || | | ||| Sbjct 19117360 GAGTGGATGCTGTCGATGGTGATCTGGAAGTCGTAGAAAGCGCATGACTTGGAGAGATGG 19117301 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| ||| || |||||||| ||||||||||||| || || ||| Sbjct 19117300 ACCTCCTTCATGAAGCGGATAGCGAGGTTCTCAAGCACGATGCCGTCGGAGGTGGGGAAG 19117241 Query 869753 AAA 869755 ||| Sbjct 19117240 AAA 19117238 >seq8 Length=74329289 Score = 86.0 bits (94), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 1176387 TCGTGCACCGCGACGTCAAGTCGCTCAACCTGCTGCTCGACAACAAGTGGAACGTCAAGG 1176446 ||| |||||| ||||||||| ||| ||||||||||| ||| ||||| ||||| | |||| Sbjct 46843076 TCGCGCACCGGGACGTCAAGCCGCAGAACCTGCTGCTGGACCACAAGGGGAACCTGAAGG 46843017 Query 1176447 TCTCGGACTTTGGCCTG 1176463 |||||||||| || ||| Sbjct 46843016 TCTCGGACTTCGGGCTG 46843000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106732897754467