Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq8 100 2e-16 seq6 87.8 1e-12 >seq8 Length=74329289 Score = 100 bits (110), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| || |||| || || || || || | ||| ||| Sbjct 36266508 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 36266567 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | | || ||| || ||| ||||| |||||| | ||| ||||| Sbjct 36266568 CGACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCA 36266627 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| ||||| | ||| || ||||| || ||||||| || || ||||||||||||| Sbjct 36266628 GCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACAA 36266687 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGG 110498 ||| || || || || || | ||| ||||| | |||| |||||| Sbjct 36266688 CATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGACT--GAGGGG 36266732 >seq6 Length=53892272 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || ||||| || | || || |||||||| ||| | || ||| | Sbjct 43309958 AATGCAGATTTTCGTCAAGACCCTGACAGGAAAAACCATCACCTTGGAGGTTGAGAGTTC 43310017 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | || || ||||| ||||| || || | || ||| || Sbjct 43310018 AGACACTATTGATAATGTTAAGGCAAAGATCCAAGACAAGGAGGGGATCCCACCGGACCA 43310077 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| |||| || ||||| ||||||||||||| || || | ||||| ||||| Sbjct 43310078 ACAGAGACTGATTTTCGCCGGTAAGCAGCTGGAGGATGGGAGGACCCTTGCGGACTACAA 43310137 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || || ||||| | ||| ||||| | | || || ||||| Sbjct 43310138 CATTCAGAAGGAGTCTACACTCCACCTGGTGCTCCGCCTTCGTGGGGG 43310185 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 ||| | |||||||| || || |||||| | || ||||| || || ||| | || ||| Sbjct 13066515 TTTCAGATGCAAATCTTCGTGAAAACTCTTACTGGCAAGACTATCACCCTAGAGGTTGAG 13066456 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 | || || ||| | | ||||| ||||| ||||| || || | ||| Sbjct 13066455 AGTTCAGACACAATCGACAATGTAAAGGCCAAGATCCAAGACAAGGAGGGGATTCCCCCA 13066396 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 || || ||||| || || | ||| || || ||||| ||||||| | || |||| ||| Sbjct 13066395 GACCAGCAAAGGCTCATCTTTGCAGGCAAGCAGCTCGAGGATGGGCGCACCTTGGCTGAT 13066336 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| || || ||||| || ||||| |||| Sbjct 13066335 TACAACATCCAGAAGGAATCGACCCTGCACTTGGT 13066301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412816689008843