Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9 221 2e-51 seq10 174 2e-37 seq2 174 2e-37 seq626 159 5e-33 seq1766 156 7e-32 seq4 86.0 1e-10 >seq9 Length=39018107 Score = 221 bits (244), Expect = 2e-51 Identities = 243/324 (75%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||||||| ||| | ||||| ||| ||| || ||||||||||| |||||| Sbjct 26347907 CCCTCGTCGCGAGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCCCGCTTC 26347966 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| |||||||| ||||| ||||| ||||| ||||| ||||| ||| ||| ||| Sbjct 26347967 TTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCAACGCAGGCGAAG 26348026 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||| ||| ||||| || || | ||| ||| || |||||| | ||||| Sbjct 26348027 GCGAGGAGGCGCTCCGCGAAGGACTCCCCGCCGTC------GATCCAGCGGAGGGCCCAG 26348080 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| || | || || ||||||| |||||| |||||| ||||||||||| Sbjct 26348081 TCGGCCTTGCGGGCGACGGCCGGGACGGTGTCGACGGCGCGGAAGAGGCGGTCCTTCTCG 26348140 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | | ||||||||||||||| || | ||||| ||| |||| ||||||||||| ||| Sbjct 26348141 GCGGAGTCCTTGACGTAGGTCTCCAGTAGGAGGCTGTACATCTCGGAGTGGATGTTCTCG 26348200 Query 794641 ATGGCGATCTGGAAGCCATAAAAG 794664 ||||||||||||||||| || ||| Sbjct 26348201 ATGGCGATCTGGAAGCCGTAGAAG 26348224 Score = 203 bits (224), Expect = 5e-46 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||| | | ||||||||||||||||||||| |||| |||||||| |||||||| Sbjct 26348230 GGCCTCCGAGAGCTGGACCTCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCC 26348289 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||| |||||||| ||||| ||| ||||| |||||| ||||| |||| Sbjct 26348290 GTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGTGACGAAGTGGCGCTCGCCGTCGGTGAG 26348349 Query 796269 CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGC 796328 |||||||| ||| | |||||||||||||||||||||||| |||||||| Sbjct 26348350 GCCCTCCCAGTGGCGGAGGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGC 26348409 Query 796329 CTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCG 796388 ||| |||| |||||||||||||| ||| | |||| |||| ||||||| ||||| Sbjct 26348410 CTCCGCCTGCTTGTACATCTCCCAGATCTGCGGGTACTGGATAGGGAACATGCAGAAGCG 26348469 Query 796389 ATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 | |||||| | ||||| ||||| Sbjct 26348470 GTCCGGGTTCGGGGCCAGCAGGGGCTC 26348496 Score = 168 bits (186), Expect = 1e-35 Identities = 229/313 (73%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| || || ||| |||||| ||||||||||| |||| |||||||| | ||||||| Sbjct 26347601 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 26347660 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGT---GCTTCTCGCACCCGAGCGACGCAAGCAGG 794024 || ||||||||| ||||| || || ||| |||| ||||||| | || || Sbjct 26347661 CAGTCGAACGGGTT---CGTCACGTCGTACACCTTGCCGCAGCCGAGCGCGCCGAGAAGC 26347717 Query 794025 CGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC- 794083 |||||||||||||| || |||||||||| ||| ||| || |||||| || | || || Sbjct 26347718 CGGTCGGCGACGAACTCGATGTACTGGCCCATCAGGTCGCTGTTCATCCCAACCAGGGCG 26347777 Query 794084 CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTG 794143 ||| ||||||| |||| ||| ||||| |||||| ||||||||||| | |||| Sbjct 26347778 CAC-GGCAGCGCGTCGCAGACGAACTCCCGCTCGATGTCGACGGCCTCCCGCACGATC-C 26347835 Query 794144 CCTGGGCACG-TCGGACGACGGCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 794202 ||| | || || |||||||| |||| || |||||| |||||||| |||| Sbjct 26347836 CCTTCACCCGCTCCTCGCTCGGCTTGTTCCGCAGCAGCGAGTAGAGGAGGCAGGCGAAGT 26347895 Query 794203 CGCAATGCAGACC 794215 |||| || || || Sbjct 26347896 CGCAGTGGAGGCC 26347908 >seq10 Length=39358841 Score = 174 bits (192), Expect = 2e-37 Identities = 182/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| |||||||||||| |||| || |||||| | | Sbjct 26613908 TGAACTTGGTCACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGA 26613967 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || ||||| ||||||||||||||||| |||| | ||| ||| |||||| || Sbjct 26613968 GGACGAGGCGGACGGCGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGC 26614027 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| || ||| | ||| |||| |||||||||| || ||||||| Sbjct 26614028 GGGCGAGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCA 26614087 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||| | ||| ||||||| || | ||| |||||||||||||| ||||||||| Sbjct 26614088 TGATGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGGTGCACCTGCTTCAGCACCTTG 26614146 Score = 150 bits (166), Expect = 3e-30 Identities = 180/241 (75%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||| |||||||| ||||| || ||||||||| |||| || || ||| ||| Sbjct 3820622 TGAACTTGGTGACCGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCGAGCTCCCCGGGCA 3820681 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| ||||| ||||||||||| |||| | ||| ||| |||||| | Sbjct 3820682 GCACGAGGCGGACGGCCGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTACC 3820741 Query 1485590 GCGCCAGGCG-GCCGGCCTCGGTGCC-GATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 ||||||| || | || | | | ||| | | | |||| |||||||||| || ||| Sbjct 3820742 GCGCCAGCCGCGACGACTCCTGGGCCAGCTTC--TCGAAGATGTCGTTGATGAAGCTGTT 3820799 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 ||||||| ||||| ||| | |||||||| | ||| ||||| |||||||| |||||||| Sbjct 3820800 CATGATCCCCATCGCCTTGCTCGAGATGCCGATGTCCGGGTGGACCTGCTTCAGCACCTT 3820859 Query 1485708 G 1485708 | Sbjct 3820860 G 3820860 >seq2 Length=64235786 Score = 174 bits (192), Expect = 2e-37 Identities = 179/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||||||||||||||| ||||| |||||||||||| ||||||| || ||| ||| || Sbjct 63168808 TTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCCCCGGGCAAGACG 63168867 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 ||||| |||||||||||||| || |||| | ||| ||| |||||| ||| || Sbjct 63168868 AGGCGGACGGCGGTCTGGATTTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCG 63168927 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 |||||| || ||| | ||| |||| |||||||||| || ||||||||||| Sbjct 63168928 AGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATG 63168987 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| |||||||||| | ||| ||||| |||||||| ||||||||| Sbjct 63168988 CCCATGGCCTTGCTGGAGATGCCGATGTCCGGGTGGACCTGCTTCAGCACCTTG 63169041 >seq626 Length=20894 Score = 159 bits (176), Expect = 5e-33 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || |||||||| ||||| |||||||||||| |||| || |||||| | | || Sbjct 12012 ACTTGGTCACAGCCTTGGTCCCCTCAGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGA 12071 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || || ||||||||||||||||| |||| | ||| ||| |||||| ||| | Sbjct 12072 CGAGCCGGACGGCGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGG 12131 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 | |||||| || ||| | | | |||| |||||||||| || |||||||||| Sbjct 12132 CGAGGCGGGAGGACTCCTGGGCAAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGA 12191 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| | ||| ||||||| || | ||| |||||||||||||| ||||||||| Sbjct 12192 TGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGGTGCACCTGCTTCAGCACCTTG 12247 >seq1766 Length=8545 Score = 156 bits (172), Expect = 7e-32 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || |||||||| ||||| || ||||||||| |||| || |||||| | | || Sbjct 1896 ACTTGGTCACAGCCTTGGTCCCCTCGGACACGGCGTGCTTGGCGAGCTCGCCGGGGAGGA 1837 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || || ||||||||||||||||| |||| | ||| ||| |||||| ||| | Sbjct 1836 CGAGCCGGACGGCGGTCTGGATCTCCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGG 1777 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 | |||||| || ||| | ||| |||| |||||||||| || || ||||||| Sbjct 1776 CGAGGCGGGAGGACTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAATTCATGA 1717 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| | ||| ||||||| || | ||| |||||||||||||| ||||||||| Sbjct 1716 TGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGGTGCACCTGCTTCAGCACCTTG 1661 >seq4 Length=41978195 Score = 86.0 bits (94), Expect = 1e-10 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 2018905 ACTTTGGCCTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCA 2018964 |||| | | | |||||| | || |||||||| |||| | ||| |||||||||||||| Sbjct 33066293 ACTTCGACATGCCGTGGGTGGAGAAGTACCGGCCGAGCAAGGTCGCCGACATCGTGGGCA 33066352 Query 2018965 ACGAGCACGCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCT 2019024 ||||| ||||||| || || ||| | || |||||||||||||||||||||| Sbjct 33066353 ACGAGGACGCCGTCTCCAGGCTGCAGGTCATCGCTCGCGACGGCAACATGCCCAACCTCA 33066412 Query 2019025 TGCTG 2019029 | ||| Sbjct 33066413 TCCTG 33066417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915719739548489