Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 8e-16 seq8 89.7 4e-13 seq5 86.0 5e-12 >seq6 Length=53892272 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| |||||||| || | || || || || || || | ||| |||| ||| Sbjct 13065598 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTTTGGAAGTGGAGAGCTC 13065539 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| ||| | | || ||| || ||| || || |||||| | ||| ||||| Sbjct 13065538 T-GATACCATCGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 13065480 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||||| ||| || |||||||| ||||| | | || |||| || || | Sbjct 13065479 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAGGATGGTAGGACTCTGGCAGATTATA 13065420 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||| || || ||||| || | ||| |||| Sbjct 13065419 ACATCCAGAAAGAGTCGACTCTTCACTTGGT 13065389 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||| ||||| || | ||||| |||||||| ||| | || ||| | Sbjct 43309958 AATGCAGATTTTCGTCAAGACCCTGACAGGAAAAACCATCACCTTGGAGGTTGAGAGTTC 43310017 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || || |||||| || || || || | || ||| || Sbjct 43310018 AGACACTATTGATAATGTTAAGGCAAAGATCCAAGACAAGGAGGGGATCCCACCGGACCA 43310077 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||| |||| || ||||| ||||||||||| | | || | ||||||||||| Sbjct 43310078 ACAGAGACTGATTTTCGCCGGTAAGCAGCTGGAGGATGGGAGGACCCTTGCGGACTACAA 43310137 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| ||||||||||| | ||| ||||| Sbjct 43310138 CATTCAGAAGGAGTCTACACTCCACCTGGTG 43310168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || || || ||||| || | || |||| | Sbjct 13058421 ATGCAGATCTTTGTCAAGACCCTGACCGGAAAGACCATCACTTTGGAGGTGGAGAGTTCA 13058362 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || |||||| ||||| |||||| | || |||||| Sbjct 13058361 GACACCATCGACAACGTGAAGGCAAAGATCCAGGATAAGGAAGGCATCCCGCCAGATCAG 13058302 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| |||||| || || || || |||| | || |||| ||||| ||| Sbjct 13058301 CAGAGGCTGATTTTTGCGGGGAAGCAACTCGAAGACGGGAGGACTCTGGCTGACTATAAC 13058242 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || || ||||| || ||||| |||| Sbjct 13058241 ATCCAGAAAGAGTCGACTCTGCACTTGGT 13058213 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTG 107613 |||||| ||||| || || ||| | || || || || ||||| | || || | ||| Sbjct 43309730 AATGCAGATTTTCGTGAAGACTCTCACTGGGAAGACGATTACTCTTGAGGTCGAAAGCTC 43309789 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 |||||||||| | | || || || ||| || ||||| || | || ||| | Sbjct 43309790 T-GATACTGTCGACAATGTGAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCGGACC 43309848 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||| || || || | ||| |||||||| || || || | || ||| |||| ||||||| Sbjct 43309849 AGCAAAGGCTGATCTTTGCTGGTAAACAACTTGAAGATGGCAGGACATTGGCCGACTACA 43309908 Query 107734 ACATTCAAAAGGAGTCTAC 107752 |||| |||||||| || || Sbjct 43309909 ACATCCAAAAGGAATCGAC 43309927 >seq8 Length=74329289 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || | || || || ||||| || | ||| ||| ||| | Sbjct 36266737 ATGCAGATTTTTGTCAAGACCCTTACTGGGAAGACCATAACTTTGGAAGTTGAGAGCTCG 36266796 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| ||||| || ||||||||| | ||| ||||| Sbjct 36266797 -GATACCATTGATAATGTCAAAGCTAAGATACAGGACAAAGAAGGCATTCCCCCAGATCA 36266855 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| || || || || || ||||| | | ||| ||||||| ||||| Sbjct 36266856 GCAGAGGTTGATTTTCGCCGGGAAGCAACTTGAGGATGGCCGGACACTGGCGGATTACAA 36266915 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| |||||||| || Sbjct 36266916 CATTCAGAAGGAGTCAAC 36266933 >seq5 Length=74729908 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| || | || ||||| ||||| ||| | || |||| ||| Sbjct 64848617 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGAGCTC- 64848675 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || ||||| || || || ||| | ||| ||| || Sbjct 64848676 CGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 64848735 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||||||||||| | || ||||||| ||||| Sbjct 64848736 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGGCGGATTACAA 64848795 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || | ||| | ||| Sbjct 64848796 CATCCAGAAGGAGTCGACCCTTCACCTCGTG 64848826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398852731649239