Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 5e-15 seq8 87.8 3e-12 >seq6 Length=53892272 Score = 96.9 bits (106), Expect = 5e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| ||||| ||| | || || || | Sbjct 13065596 TGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTTTGGAAGTGGAGAGCTCTG 13065537 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| ||||| || || ||||||||||| || ||||| | Sbjct 13065536 ATACCATCGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATCAGC 13065477 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || ||||| |||| ||| ||| || | |||||||||| | Sbjct 13065476 AGAGGCTTATTTTTGCTGGGAAACAGCTAGAGGATGGTAGGACTCTGGCAGATTATAACA 13065417 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||| |||||| | || || || | || | || ||||| Sbjct 13065416 TCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGTCTGAGGGGAGG 13065371 Score = 93.3 bits (102), Expect = 7e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || || |||||||| ||| | || || || | Sbjct 13058876 TGCAAATCTTTGTCAAGACTCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTCTG 13058817 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| ||||| || || ||||||||||| || ||||| | Sbjct 13058816 ACACCATCGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAGC 13058757 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||||||||| || || || |||| ||| || || | |||||||||| | Sbjct 13058756 AGAGGCTCATTTTTGCTGGGAAGCAGCTAGAAGATGGCAGGACTCTGGCAGATTATAACA 13058697 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || |||||||||||| | || || || | || | || ||||| Sbjct 13058696 TCCAGAAAGAATCGACTCTTCACTTGGTTCTGCGTCTTAGGGGAGG 13058651 >seq8 Length=74329289 Score = 87.8 bits (96), Expect = 3e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || |||| || || || || ||| | || || || || Sbjct 36266510 TGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTCCG 36266569 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| ||| ||||| || || ||||||||||| || ||||| | Sbjct 36266570 ACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAGC 36266629 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || || ||||| || |||||| | || ||| ||| || || | ||||| || | Sbjct 36266630 AAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTACAACA 36266689 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || ||| | || || || | ||| | || ||||| Sbjct 36266690 TCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGACTGAGGGGAGG 36266735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786117746126920