Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq10 161 7e-34 seq7 107 1e-17 seq5 98.7 7e-15 seq3482 86.0 5e-11 >seq10 Length=39358841 Score = 161 bits (178), Expect = 7e-34 Identities = 604/926 (65%), Gaps = 36/926 (4%) Strand=Plus/Minus Query 281558 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 ||||||||| ||| |||||| ||| ||| ||| || || || || || | || ||| Sbjct 457808 TCACCCTCGTAAACCTGGATAAGGACTCCAGGTTGGTTGTCCGAGTAGGTGGAGAACACT 457749 Query 281618 CTGGATTTTTTACAAGGAATTGTTGTGTTTCT----ATCAATAATATTGGTCATAATACC 281673 || || || || || |||||||| ||||| | ||||| | ||| Sbjct 457748 TGTTCCTTCTTGGTGGGGATAGTGGTGTTTCTTGGGATCAACACA----GTCATGACACC 457693 Query 281674 ACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT--TGA 281731 || || ||||| | ||||||||| || || |||||||| | | |||||| | || Sbjct 457692 TCCCGCAGTTTCCAGACCAAGAGAGAGGGGTGTGACATCCAGCA--ACAATAGATCCTGG 457635 Query 281732 AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 281791 | || |||| | ||| | ||| || ||||||| || || ||||| || ||| Sbjct 457634 ACCTTCTCATTGCCCTCGCCACTCAAAATTGCAGCTTGAACGGCTGCGCCATAAGCCACA 457575 Query 281792 GCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGA 281848 ||||||||||| || | | || || || | || || ||||| |||| || || | Sbjct 457574 GCTTCATCAGGGTTGATGCTCTTGCAG--AGCTCCTTCCCGTTGAAGAAATCCTGCAATA 457517 Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 | || ||||| || || | || || || || || | |||| || || || || Sbjct 457516 -GCTGCTGCACCTTGGGGATCCTAGTGGAACCACCCACAAGGACAACATCGTGGACA-GT 457459 Query 281909 GAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAA 281967 | | || |||| |||| |||| | | || ||||| || || | || || || Sbjct 457458 GCTCTTGTCCATCTTTGCATCCCTGAGACACTTCTCAACTGGCTCCATACACTTCCTGAA 457399 Query 281968 CAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTC 282026 | ||| | || || |||||| | || | || | || | | || || || | | Sbjct 457398 GAGGTCCATATTGAGCTCCTCGAATCTGGCACGGGTGATTGT-AGAGTAGAAATCCACAC 457340 Query 282027 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGTGCACGTT 282083 | || |||||||||||| ||| ||||| || || ||| || || || ||| | | || Sbjct 457339 CCTCATACAAAGAATCAATTTCGATCGTTGTCTGGGCAGTGGAGGA-GAGAGTTCTCTTT 457281 Query 282084 TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAG-GCTTTTGCTGATTGATTCAAATCT 282142 || | |||||| |||||||| | ||| | |||| || | | | ||| | ||| Sbjct 457280 --GCCCTTTCACAAGCTGTCCTCAATCTCC-TAAGAGCCCTCGGGTTTCCATTGATATCC 457224 Query 282143 GTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCT 282202 | || | ||||||||||| |||| |||| | | || | | ||||| || || Sbjct 457223 TTCTTGTGCTTTCTCTTGAACTCTTGAACAAAGTGGTTCACCATTCTGTTATCGAAGTCC 457164 Query 282203 TCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGA 282262 ||||| || | | ||||| ||| | || || | || | ||| | || ||||||| | Sbjct 457163 TCACCGCCAAGATGAGTATCTCCAGCTGTTGCCTTCACCTCGAAGATACCCTCTTCAATA 457104 Query 282263 GACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCT 282322 | | || | ||||| || |||||||| | ||||||||| | |||||| | ||| Sbjct 457103 GTTAGGAGGGACACATCGAATGTACCACCACCAAGATCAAAAATCAACACATTCTTCTCT 457044 Query 282323 TTGT--CT--TGGTTTT--TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 || ||| ||| | ||||||||||| || | || |||||||| || ||||| Sbjct 457043 CCCGAGCTGGTGGCTTTCTTGTCAAGACCATAAGCGATGGCCGCAGCAGTCGGCTCATTG 456984 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 || || | || ||||| || |||||||| || ||||| || ||||| || || || Sbjct 456983 ATGATACGCATGACATTGAGGCCAGCAATGACACCGGCATCCTTGGTGGCCTGCCTCTGA 456924 Query 282437 GAATCGTTAAAATATGCAGGAACAGT 282462 || || ||||| || ||||| || || Sbjct 456923 GAGTCATTAAAGTAGGCAGGGACGGT 456898 Score = 136 bits (150), Expect = 3e-26 Identities = 596/931 (64%), Gaps = 24/931 (3%) Strand=Plus/Minus Query 281558 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 ||||||||| ||| |||||| ||| ||| ||| ||||| || || || | || || Sbjct 509214 TCACCCTCGTAAACCTGGATAAGGACTCCAGGTTGGTTATCCGAGTAGGTAGAGAACAC- 509156 Query 281618 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCT----ATCAATAATATTGGTCATAATAC 281672 ||| || || || || || |||||||| ||||| | ||||| | || Sbjct 509155 CTGCTCCTTCTTGGTGGGGATGGTGGTGTTTCTTGGGATCAAGACA----GTCATGACAC 509100 Query 281673 CACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAA 281732 | ||||| ||||| ||||| |||| || || |||||||| | || | | | || | Sbjct 509099 CTCCAGCGGTTTCCAAACCTTGAGAGAGGGGGGTGACATCCAGCAGCAACAAGTCCTGGA 509040 Query 281733 GTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAG 281792 || |||| | | |||| | ||| || ||||||| || |||||||| || |||| Sbjct 509039 CCTTCTCATTACCCTCACCACTCAAAATTGCAGCTTGAACCGCCGCACCATAAGCCACAG 508980 Query 281793 CTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAA 281849 |||||||||| |||| | || || || | || || ||||| |||| || || | Sbjct 508979 CTTCATCAGGGTTAATGCTCTTGCAG--AGCTCCTTCCCGTTGAAGAAATCCTGCAATA- 508923 Query 281850 GTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 281909 | || ||||| || || | || || || || || | |||| || || | ||| Sbjct 508922 GCTGCTGCACCTTGGGGATCCTAGTGGAACCACCCACAAGGACAACATCGTGGATA-GTG 508864 Query 281910 AT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968 | || |||| |||| |||| | || ||||| || || | || || || Sbjct 508863 CTCTTGTCCATCTTTGCATCCCTGAGGCACTTCTCAACTGGCTCCATACACTTCCTGAAA 508804 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 282028 | ||| || || || ||| | || | ||| | ||| | |||| | || Sbjct 508803 AGGTCCATGTTGAGCTCCTCAAATCTGGCACGAGTGATTGTGGAGTAGAAATCCACACCC 508744 Query 282029 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 282088 ||| ||| ||| |||| ||| || || || |||| | || || || | | || || Sbjct 508743 TCGTACAGAGAGTCAATTTCGATTGTCGTCTGAGCAGTGGAGGAGAGAGTTCTCTTCGCC 508684 Query 282089 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTTA 282148 | |||||| |||||||| | ||| | || || | | | | | | || | || Sbjct 508683 CTTTCACAAGCTGTCCTCAATCTCCTTAGAGCCCTCGGGTTTCCACTGATGTCCTTCTTG 508624 Query 282149 TATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCT 282208 | || |||||||| |||| ||| | | || | | |||||||| || ||||| Sbjct 508623 TGCTTCCTCTTGAACTCTTGCACAAAGTGGTTCACCATTCTGTTATCAAAGTCCTCACCA 508564 Query 282209 CCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAA 282268 || | | ||| | ||| | || || | || | || | || || |||| | | Sbjct 508563 CCAAGATGAGTGTCTCCAGCTGTTGCCTTCACCTCAAAGATACCCTCCTCAATGGTTAGG 508504 Query 282269 AGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT 282328 || | |||||| || |||||||| | || || || | |||||| | ||| | Sbjct 508503 AGGGACACATCAAAAGTACCACCACCAAGGTCGAAGATCAACACATTCTTCTCTCCCACA 508444 Query 282329 ----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||| || ||||| |||||||| |||| || ||||||||||| |||||||| || Sbjct 508443 CTGGTGGCCTTCTTATCGAGACCATAAGCAATGGCCGCAGCAGTTGGCTCATTAATGATA 508384 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | || ||||| || || ||||| || ||||| || ||||| || || || || || Sbjct 508383 CGCATGACATTGAGCCCTGCAATGACACCGGCATCCTTGGTGGCCTGCCTCTGAGAGTCA 508324 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || || ||||| ||||| | ||| |||| Sbjct 508323 TTGAAGTAGGCAGGGACAGTGACAACTGCAT 508293 >seq7 Length=52445601 Score = 107 bits (118), Expect = 1e-17 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 282343 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 282402 |||||| | || |||||| ||||| || ||||| || ||||| |||| ||| || || Sbjct 18101654 ACCATATGAAAGAGCAGCTGCAGTGGGCTCATTGATGATTCTTTCTACATCAAGCCCTGC 18101595 Query 282403 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 ||| || || |||||||| || || ||||| || | ||| || ||||| || |||||||| Sbjct 18101594 AATCCTCCCAGCATCTTTTGTTGCCTGTCTCTGAGCATCATTGAAATAGGCTGGAACAGT 18101535 Query 282463 AATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTT 282519 |||||| || | || | | ||| || | |||||| || |||| | |||| || Sbjct 18101534 AATAACAGCTTTTGAAATTGATTTCCCCAAATAAGCCTCGGCAGTTTCTCTCATCTT 18101478 Score = 100 bits (110), Expect = 2e-15 Identities = 231/345 (67%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 281383 AGTAATAGTAATATTCTTGGATTTGTTT---GTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||||||||| |||| |||| || ||| ||| |||||| | ||||| ||| || Sbjct 3744231 AGTAATAGTGATAT-CTTGC--TTCTTTCCAGTTCCTTTATCCACAGCAGTAACAGAGAG 3744287 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 ||| ||||||||||| | |||||| |||| |||||||||||||| |||| |||| || Sbjct 3744288 AATTCCATTGGCATCGATATCAAACTTGACCTCAATTTGAGGGACACCTCGAGGAGCTGG 3744347 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 |||||| || || | || | || ||| |||||||| || || | | || Sbjct 3744348 TGGGATACCATCAAGGCGGAAGCTGCCGAGAGATTTATTATCCCTAACAAACTCCCTCTC 3744407 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 || | || | | || || ||||||| ||| | ||| | || ||| Sbjct 3744408 CCCTTGGAGGACATTAATCTCGACGCTAGTTTGACCATCAGCTGCAGTAGAGAAAACTTC 3744467 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 ||||| | || | |||||||| || ||| || |||||||| | |||||| Sbjct 3744468 TGATTTAGAAGTCGGGAGAGTTGTGTTCCTTGGAATGATCTTGGTCATGACACCACCCAG 3744527 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 281724 ||| || ||||||||||| || || || ||||| | || ||||| Sbjct 3744528 TGTCTCCAAACCAAGAGATAGTGGTGTCACATCTAAAAGAACAAT 3744572 Score = 95.1 bits (104), Expect = 9e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 86118 ACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGC 86177 ||| |||| |||||| |||||||| || ||||| || ||| | ||||| | || || Sbjct 18101654 ACCATATGAAAGAGCAGCTGCAGTGGGCTCATTGATGATTCTTTCTACATCAAGCCCTGC 18101595 Query 86178 AATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGT 86237 ||| | ||| ||| ||||| |||||||| || ||||| ||||| ||||| ||||| Sbjct 18101594 AATCCTCCCAGCATCTTTTGTTGCCTGTCTCTGAGCATCATTGAAATAGGCTGGAACAGT 18101535 Query 86238 AATAACTGCTTT 86249 |||||| ||||| Sbjct 18101534 AATAACAGCTTT 18101523 >seq5 Length=74729908 Score = 98.7 bits (108), Expect = 7e-15 Identities = 125/170 (74%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 ||||||||||| | ||||||| ||| | ||| | || ||| || | |||| Sbjct 10809827 GTTCCACCACCTAGGTCAAAAACAAGGATGTTCTTCTCACCACCTTTCTTGTC--CAAG- 10809771 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 |||||||||| ||||||||||| |||||||| |||||||| |||||| || |||||| Sbjct 10809770 CCATACGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTAGCAACATTCAGTCCAGCA 10809711 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||| || || || || || ||||| ||||| | ||| || || || || Sbjct 10809710 ATTACACCAGCGTCCTTGGTAGCTTGCCTTTGGGCATCATTGAAGTAGGC 10809661 >seq3482 Length=3826 Score = 86.0 bits (94), Expect = 5e-11 Identities = 254/387 (66%), Gaps = 10/387 (3%) Strand=Plus/Minus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 |||||| ||||| | |||||||| || || | ||||| ||| | ||||||||| | Sbjct 796 CGGCAGAGACATTCAATATACCATTAGCGTCAATGTCAAAGCAGACGTTAATTTGAGGAA 737 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | ||||| |||| || || || || | | |||| | ||||| |||||||| Sbjct 736 CACCTCTAGGAGCTGGAGGAATGCCCGAGAGCTCAAATTTGCCCAGCAAGTTATTATCCC 677 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 | || || || ||||| ||| ||||| || | | ||| || ||||| | Sbjct 676 TGGTTCTCGCTCTCTCCCCCTCATAAACCTGGATGAGCACGCCGGGTTGGTTGTCTGAGT 617 Query 281604 AAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCT----ATCAATAATA 281659 | || | || ||| || || ||||| || ||||| || ||||| || | Sbjct 616 AGGTCGAGAAGACTTGCTCCTTCTTGGTAGGAACGGTGGTGTTCCTTGGGATCAA-AACA 558 Query 281660 TTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGG 281719 ||||| | ||| ||||| ||||| ||||||||||| || ||||| ||||| | || Sbjct 557 ---GTCATGACACCTCCAGCAGTTTCCAAACCAAGAGACAGCGGAGTAACATCCAAGAGC 501 Query 281720 ACAATATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGC 281778 | | || ||| | || |||| | |||| |||| || || || || | || || Sbjct 500 AATAGATCTTGCACCTTCTCATTCCCCTCACCACTCAAG-ATCGCAGCCTGGACCGCTGC 442 Query 281779 ACCATATGCAACAGCTTCATCAGGATT 281805 |||||| || ||||| || || || || Sbjct 441 ACCATAGGCCACAGCCTCGTCGGGGTT 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740387326822926