Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq2340 242 9e-60 >seq2340 Length=6312 Score = 242 bits (268), Expect = 9e-60 Identities = 1015/1561 (65%), Gaps = 77/1561 (5%) Strand=Plus/Minus Query 19522 GCACCTGGCGCAGTCCATCGGCGACATCCTCACCACGCCGATCGGCTCGCGGGTGATGCG 19581 |||| | || |||||||||| ||||| |||||||| | ||| | || || ||| Sbjct 1982 GCACATCGCCCAGTCCATCGAAGACATTCTCACCACCCGCCAGGGCACCCGCGTCGAGCG 1923 Query 19582 CCGCGACTACGGCAGCGAGGTCCCCGATCTGATCGACCAGCCGCTGAACCCGGCAACCCG 19641 ||| || ||||||||| | | ||||| ||| | ||||||||||| ||| | || ||||| Sbjct 1922 CCGAGAGTACGGCAGCCTGCTGCCCGAGCTGGTTGACCAGCCGCTCAACGCCGCCACCCG 1863 Query 19642 CCTGCGCACCATGTCCGCCG-CCGTGTCGGCGCTGGTGCGCTGGGAGCCGCGTATCCGCA 19700 ||||||| | | | || || ||| ||| ||| |||||||||| ||||| ||| || Sbjct 1862 CCTGCGC-CTGTATGCGGCGACCGCCATGGCCCTGATGCGCTGGGAACCGCGGATCAGCC 1804 Query 19701 TTGCCTCGGT-GCGGTTCTGGATCGACGCGGACGGCAAGCCCGTGATCGACATCGAGGCC 19759 ||||| ||| | | | |||| ||| || || | ||| | ||| || ||| | Sbjct 1803 TTGCCCAGGTCGAGCTGCTGG-TCGGCGACCTTAGC--GGCCGCGC-CGA-ATTGAGCCT 1749 Query 19760 GACCGC-------GTGGACGGCC-CGCGCCGTGAAGCGGCAGGCACGCTGTCCGTGCCCC 19811 ||||| |||||| | || |||| | | | | ||| | | ||| | Sbjct 1748 GACCGGCGTCCTGGTGGACACCAACGAACCGTTCAACATCCG-CACACCGC---TGCAAC 1693 Query 19812 TGCGGAGCTGACCATGGCAACC---------ATCGACCTGTCACAGCTGCCGGCGCCGGC 19862 || || || | |||| ||| |||||||| |||||||| |||||| Sbjct 1692 TGGGGGGCAGTGCATGAATACCTTCCTGCCTATCGACCTCAGTCAGCTGCCCGCGCCGCA 1633 Query 19863 CGTGGTCGAAACGCTCGACTACGAAGCCATCCTGGCCGAGCGGAAAGACTACTTTGTGTC 19922 |||||||| | |||||| |||| ||||| |||||||| || | || || Sbjct 1632 GGTGGTCGAGCAGATCGACTTCGAACAGATCCTCGCCGAGCGCAAGGCTTATGCCGTCAG 1573 Query 19923 GCTGTATCCCGCCGACCAGCGGGACGCCGTGCGCGCCACGC-TGGAGCTGGAATCCGAGC 19981 || | || || || ||| || || | ||| ||||| | |||||||| || |||| Sbjct 1572 CCTATGGCCTGCGGATGAGCAGGCCGAGAT-CGCCGCACGCCTTGAGCTGGAGTCGGAGC 1514 Query 19982 CGATCACCAAGCTCTTGCAGGAGAACGCCTACCGCGAGCTGGTGTGGCGCCAGCGCGTGA 20041 | ||||||||| | ||||||||||||||||||| || || | ||| ||||| || | Sbjct 1513 CCATCACCAAGTTGCTGCAGGAGAACGCCTACCGGGAAATGATCCTGCGTCAGCGGGTCA 1454 Query 20042 ACGACGCGGCGCGCGGGGTCATGCTGGCCTTCGCCGAAGGGGAAGACCTGGAGCAGATCG 20101 |||| ||| ||| || ||| ||||| || |||| | | |||||||| ||| ||| Sbjct 1453 ACGAAGCGTCGCTCGCGGTGATGCTCAGCTCGGCCGGCGACAACGACCTGGACCAGGTCG 1394 Query 20102 CGGCGAACTTCAACGTGCAGCGCTTGACCA-TCACGCCGGCTGACGACACCACCGTGCCG 20160 ||| ||||||||||| ||||| || || ||| || | | | || |||| || Sbjct 1393 CGGGCAACTTCAACGTCAAGCGCCTGGTCATTCAGGCGGCCCAGCCGCA-GGCCGTTCCA 1335 Query 20161 CCGACGCCCGCCGTGATGGAGGGCGACGACTCGCTGCGCGAGCGCGCACAGGAAGCGTTT 20220 || || ||| |||| | |||||| | |||||||||||||| || || || Sbjct 1334 CCTGTACCGCAGGTGCTGGAAAGTGACGACGCACTGCGCGAGCGCGCGCAAATGGCATTC 1275 Query 20221 GAAGGGCTGTCCGTGGCCGGCCCGACCAAGGCCTACGAGCAGTT---CGCGCGCTCGGCT 20277 ||||||||| | ||||||||| || || ||| | | || ||| ||| | ||| Sbjct 1274 GAAGGGCTGAGCACCGCCGGCCCGCGTAACGCTTAC-ATC--TTCCACGCCCGCGCCGCT 1218 Query 20278 GACGGCCGGGTGGCGGACG-CGCGCGCGATCAGCCCG--GCCGG-CGCGGAAGTGGTGGT 20333 |||||| |||| ||||||| | || ||| ||||||| |||| || || | || || Sbjct 1217 GACGGCAGGGTCGCGGACGCCACGGCCGA-CAGCCCGTCACCGGCCGTGGCA---GTCGT 1162 Query 20334 CTCGGTGC-TGTCGCACCTGAACGACGGCACGGCAGACGAGAGCCTGCTGGCGACTGTAC 20392 | | |||| | ||| | | ||||| || || |||| |||||| || || || | Sbjct 1161 CACCGTGCAGGCCGCGCAAG-GGGACGGTACTGCCAACGAAGCCCTGCTCGCCACGGTGC 1103 Query 20393 GCACCGCGTTGAGCGATGACGATACCCGGCCGCTCGGCGACCGTCTGACGGTGCAATCCG 20452 | | | ||| ||| || || || || | | |||||| |||| || ||| || Sbjct 1102 GTAGCTACCTGAACGACGAGGACCGTCGCCCCGTGGCCGACCGCTTGACCGTTCAAGGCG 1043 Query 20453 CCACCATCGTCCCGTACCGCATCCGTGCCACGCTGTACCTGGCATCG---GGGCCGGCGG 20509 || ||| ||||||| | || || | ||||| |||| | || || || | | Sbjct 1042 CCCAAATCATCCCGTATCAGGTCAAAGCGAAGCTGTTCCTGAAAACGCTCGGCCCCGAAG 983 Query 20510 CCGAGCCGATCCTGGACGCGGCTG-GCA-AGCGGGCTGACACTTACCGCACCACGCGCCG 20567 |||| || ||| ||||||| || | ||| | ||| | ||| ||||| || || Sbjct 982 CCGAACCCATCATGGACGCCGCCGAGCAGAAACTTCTGGC-CTTCGTCCACCA-ACGGCG 925 Query 20568 GCGCATCGGCCGCGACATCAACCG--CTCGGCGATCACGGCGGCACTACATGTGGAGGGC 20625 || | || | || | || || || || ||||| | ||||| || || Sbjct 924 CCGACTGGG--GATGCAGGTATCGGAGTCCGCCATTCATGCGGCCTTGCATGTCGAAGGT 867 Query 20626 GTGGAAAAGCTGGTGCTGCATGAACCGGCCGAAGACATCGCGCTCGATCTGACACAGGCG 20685 ||| ||| | | ||| | | | | | || || |||| | || | ||||| Sbjct 866 GTGCGCAAGGTCGAGCTTGAGGCATGGTCGGATATCAACGCGAGC---CTCAGCCAGGCC 810 Query 20686 GGCTACTGCACCGGCGTGGATATCGTCAACGGGGGC-ACCAGTGAGTAGC-GCAACCCTG 20743 | ||||||| | | | ||| | | || || | | |||| || || ||| | Sbjct 809 CCGTTCTGCACCTCCATTGTCCTCGCCCAGGGAAGCGAGCCATGAG--GCTGCTCCCCGG 752 Query 20744 TTgccgccgaacgcgacgccgctggagcgccgcgccgc-gcagacgggcgcacgcatcga 20802 | ||||| || || ||||| |||| || || | || | | || | ||||| Sbjct 751 T--------AACGCCACACCACTGGAACGCCAGGCGGCTGAAGCCTTG-GCCCAGATCGA 701 Query 20803 acgcgTGCCGGTGCCGCTGCGCGACCTGTGGAACCCAGCCACCTGTCCGGCCGAGCTGTT 20862 || || ||||||||| | ||||||||| ||||| | ||| || | | |||| | Sbjct 700 GCGTGTACCGGTGCCGATCCGCGACCTGATCAACCCTGAGCGCTGCCCCGTGGCGCTGCT 641 Query 20863 GCCCTTCCTGGCCTGGTCGTTTTCCGTGGACCGCTGGAACCCTTCCTGGCCGCTCGCCAC 20922 |||||||||||||||| ||||||| | || |||||| || ||| || ||| Sbjct 640 GCCCTTCCTGGCCTGGGCGTTTTCAATCGATCGCTGGGACAGCAGTTGGTCGGAGGCCGT 581 Query 20923 CAAGCGCGCCGTGACGGCCGCCTCCTACTTCGTGCACCGCAAGAAGGGCACGATCGGCGC 20982 ||||||| | || | | || ||||| || ||| | |||||||| ||||| || Sbjct 580 CAAGCGCCGGGCGATTCGCTCGTCGTACTTTGTCCACTCCCGCAAGGGCACCATCGGTGC 521 Query 20983 GCTTCGCCGCGCGGTGGAGCCGCTGGGCTACCTGATTCGCGTCATCGAGTGGTGGCAGAC 21042 || ||||| | ||| ||||| ||||||||| |||| ||| | ||||||| || || Sbjct 520 CCTGCGCCGTGTGGTTGAGCCACTGGGCTACTTGATCGAGGTCGTGGAGTGGTTTCAAAC 461 Query 21043 C 21043 | Sbjct 460 C 460 Score = 161 bits (178), Expect = 3e-35 Identities = 377/559 (67%), Gaps = 16/559 (3%) Strand=Plus/Minus Query 15047 TGGGCATGCCCCTGGCGGCGGTGCGCGCGGTCAACGAGGTTGAGAGCCGGGGGAGCGGGT 15106 ||||| |||| ||||||| | || | |||||||| || |||| |||||| Sbjct 4953 TGGGCGTGCCGGTGGCGGCTATCTATGCCCTGAACGAGGTCGAATCGAAGGGGCGCGGGT 4894 Query 15107 TCCTGCCGGACGGACGGCCCGTGATCCTGTTCGAGCGGCACGTCATGTACCGGCAGCTGC 15166 | ||| |||| ||| ||||||||||||||||| || ||||||||||||| |||| Sbjct 4893 TTCTGGATAACGGCAAGCCGGTGATCCTGTTCGAGCGTCATGTCATGTACCGGCGCCTGC 4834 Query 15167 GCGAGGCCGACCAGGATGCGGATGCGCTCGCGGCCCGGTATCCCAACATCGTCAACCCGA 15226 |||| | || | || || | || || || | || | | ||||| || | Sbjct 4833 ---AGGC-GCCCCGC--GCCGACGAACTTGCCCGCCTCAACCCTGCCCTGGTCAATCCAA 4780 Query 15227 --GCCGTGGCGGTTACGTGGGCAAGGCCGGGGAGCACATGCGGCTCGCTCATGCCATCGC 15284 |||| |||| ||| | ||| ||| ||||| ||| ||||| || ||| || Sbjct 4779 AGGCCG--GCGGCTACATCGGCGGCACCGCCGAGCATCAGCGTCTCGCCCAGGCC--CGT 4724 Query 15285 CA--TCGACCGCGATTGCGCCCTTGCGTCGGCGAGCTGGGGGCTGTTTCAAGTCATGGGA 15342 || |||| | |||||| | |||||| |||||||| || || ||||||| Sbjct 4723 CAGCTCGATGACACCGCCGCCCTGGAGTCGGCCAGCTGGGGCGCCTTCCAGATCATGGGG 4664 Query 15343 TACCACTGGGAGCGGTTGGGGTATC-CGAGCGTGCAGGCATTCGCGGACGCCATGCAAAG 15401 ||||||||| ||||| | || || ||| |||||||| |||| ||| |||| | Sbjct 4663 TACCACTGGCAGCGGCTCGGCTACATCGA-CGTGCAGGACTTCGTCGACCACATGGCGCG 4605 Query 15402 CGGCGAGGGAGCGCAGCTCGACGCCTTCGTGCGGTTCGTCACCAGTGACCCCGCCTTGCA 15461 ||||||| | |||||| || ||||| || || ||| || || || || |||| Sbjct 4604 CGGCGAGCCCGAGCAGCTGGAGGCCTTTGTCCGCTTCATCGAGGCCGATACCACCCTGCA 4545 Query 15462 CAAGGCGCTCACGGGCGGGAAGTGGTCCGCCTTCGCCGCGCTCTACAACGGGCCAGCCTA 15521 ||| || || | || | ||| ||| || |||||| ||| |||||||| | | ||| Sbjct 4544 CAAAGCCCTGAAGGCCCTGAAATGGGCCAAGGTCGCCGAGCTGTACAACGGCGCCGACTA 4485 Query 15522 CAAGGACAACCTGTATGACGTGAAGCTGGCGCGCGCCTTCGCACGCTACCAGGCCGAAGA 15581 || ||||||||| ||||||||||| | ||||||||||| || |||||| | | Sbjct 4484 CAGACGCAACCTGTACGACGTGAAGCTCGAGCGCGCCTTCGAGCGGCACCAGGACCGCGC 4425 Query 15582 GCGGGAGGCCGCATGAACC 15600 | || ||| |||||| || Sbjct 4424 GTTGGTGGCTGCATGAGCC 4406 Score = 114 bits (126), Expect = 3e-21 Identities = 171/239 (72%), Gaps = 13/239 (5%) Strand=Plus/Minus Query 18861 aTGGACACCGCAGACCTCGCCCGCCTTCTCGAAAACCTCCTGCGCATCGGCACCATCGCC 18920 ||| ||| ||| |||||| |||||| || |||||||| | ||| | |||||||||||| Sbjct 2586 ATGAACATCGCCGACCTCAACCGCCTGCTGGAAAACCTGATCCGCTTTGGCACCATCGCC 2527 Query 18921 GACGTGCGACACAGTACGCCGCCGGCCGTGCGCGTGCGCACCGGTGGCCTCACCACCACC 18980 || |||| |||| |||| |||| ||| |||| ||||| ||| | || ||| Sbjct 2526 GAGGTGCAGCACAAGCCGCC-CCGG--GTGAAGGTGCAAACCGGCGGCAACCTGACGACC 2470 Query 18981 TGGCGCCCGTGGGCCGAGCGCCGCGCGGGCCGGACGCGCACC-----TGGAACCCGCCGA 19035 |||| ||||| || ||| ||||||||| ||| | | ||| ||||||| | Sbjct 2469 TGGCTGCCGTG----GATGGCCTGGCGGGCCGG-CGCCGATCAGGAATGGGACCCGCCCA 2415 Query 19036 CCGTGGGCGAGCAGGTGCTGCTGTTCTGCCCCAGCGGCGACCCGGCCAACGCCGTCATC 19094 |||| ||| ||||| || ||| ||| |||||||||| | |||||||| |||| || Sbjct 2414 CCGTAAACGAACAGGTACTACTGCTCTCCCCCAGCGGCCAGATGGCCAACGGCGTCGTC 2356 Score = 105 bits (116), Expect = 2e-18 Identities = 138/188 (73%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 13792 CGCCGCGATGCGCGCTGGGCAGTCAGCGACATCACCGGCGCTGCGCGCACCACCGTGGAG 13851 |||||||| ||||||||| ||| | ||| || || | ||||||| ||||||||| Sbjct 5828 CGCCGCGACCAGCGCTGGGCCGTCCGGGACTTCCTTGGTACCCCGCGCACAACCGTGGAG 5769 Query 13852 CTGATCTGATGCGCGTGCGG-GCC--ATCCAGGG---CGACACCATCGACGCCATCTGCC 13905 ||| | ||||| || || | ||| | |||| ||||||| |||| ||| | ||| Sbjct 5768 CTGCTGTGATGGCCGAGCAGCGCCGAACCCAGCAACACGACACCGTCGATGCCCTGTGCT 5709 Query 13906 GGCGGGTGTACGGCCGCACGGCGAGCGTGACGGAAGCCGTGCTGGCCGCCAACCCCGGCA 13965 ||||| |||||||||||||| ||||| ||||| ||||| | |||||||| ||| Sbjct 5708 GGCGGCACTACGGCCGCACGGCCGGCGTGGTCGAAGCGGTGCTCGATGCCAACCCTGGCC 5649 Query 13966 TCGCCGAC 13973 | |||||| Sbjct 5648 TGGCCGAC 5641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127877281252968