Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq6 102 5e-17 seq1 93.3 3e-14 seq8 91.5 1e-13 >seq6 Length=53892272 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||||| ||||| || || ||| || || || |||||||| || | Sbjct 13065599 CCTCCTCTCAAACGTAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCA 13065658 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||| || || ||||| ||||| |||||||| ||| | || Sbjct 13065659 AGCGTCCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCTGGGGGA 13065718 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| ||| |||| ||| | ||| || ||||| Sbjct 13065719 ATCCCTTCTTTGTCCTGAATTTTGGCCTTC-ACATTGTCAATGGTATCAGAACTCTCCAC 13065777 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || || || || | || || |||||||||||||| Sbjct 13065778 CTCAAGAGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 13065825 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||| ||| | ||||| || || ||| || |||||||||||||| || | Sbjct 13058879 CCTCCTCTCAGACGGAGAACCAAGTGAAGGGTGGATTCCTTTTGTATGTTGTAGTCTGCA 13058938 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||| || || ||||| ||||| |||||||| ||| | || Sbjct 13058939 AGCGTCCGGCCATCCTCGAGTTGCTTGCCAGCAAAGATCAACCGCTGCTGGTCTGGGGGA 13058998 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||||| ||| |||| ||| | ||| || || || Sbjct 13058999 ATCCCTTCTTTGTCCTGGATTTTGGCCTTC-ACATTGTCAATGGTATCAGAACTCTCGAC 13059057 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || || || | || || |||||||||||||| Sbjct 13059058 CTCGAGAGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 13059105 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 ||||||| ||| ||||| ||| ||||| ||||| || || | || || ||| | || Sbjct 53467430 AACACCAGATGAAGAGTCGACTCCTTTTGGATGTTATAGTCCGCAAGAGTTCGTCCATCT 53467371 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 |||||||| || || ||||||||||| |||||||| || | || | |||||| ||||| Sbjct 53467370 TCCAATTGCTTACCAGCAAAAATCAATCGCTGCTGGTCCGGAGGAATACCTTCCTTGTC 53467312 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||||||| | |||||| || || ||| || || || ||||| ||||| | Sbjct 13059107 CCACCTCTCAAACGAAGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTATAATCAGCC 13059166 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || || | || || || ||||| || | | |||||| ||| | || Sbjct 13059167 AAAGTGCGTCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 13059226 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | || || ||||| ||| || | || ||||| ||| | ||||| ||| ||| Sbjct 13059227 ATTCCCTCCTTGTCTTGAATCTT-GGCTTTAACATTGTCAATTGTGTCTGAGCT---TTC 13059282 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || || || || || | || || |||||||||||||| Sbjct 13059283 AACCTCAAGTGTAATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 13059333 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | ||||||||| || ||| ||| || || ||||| ||||| | Sbjct 13065827 CCACCTCTCAGACGAAGCACCAAATGGAGTGTGGACTCCTTCTGGATGTTATAATCAGCC 13065886 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || || | || || || ||||| || | | |||||| ||| | || Sbjct 13065887 AAGGTGCGTCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGG 13065946 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGA---TTC 33698 | || || || || ||| || || ||||| |||| ||||| ||| ||| Sbjct 13065947 ATTCCCTCCTTATCTTGAATCTTGGCCTT-AACATTGTCAATTGTGTC---TGAGCTTTC 13066002 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || || || || || | || || |||||||||||||| Sbjct 13066003 GACCTCAAGGGTAATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 13066053 >seq1 Length=40297282 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || ||||| || | ||| | ||| || || ||| || || || |||||||||| | Sbjct 18088772 CCTCCCCTCAACCGCAGCACGAGATGGAGGGTCGACTCCTTCTGGATATTGTAATCGGCG 18088713 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || ||||| || || | ||||||||||| |||| Sbjct 18088712 AGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGCGGG 18088653 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCA 33700 | || || ||||| ||| ||| ||| || | ||| | ||||| | | | |||| Sbjct 18088652 ATCCCCTCCTTGTCCTGAATCTTCGCCTTC-ACGTTGTCGATCGTGTC-CGAGCTCTCCA 18088595 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||||||| || || || | || || || ||||| ||||| Sbjct 18088594 CCTCCAGCGTGATCGTCTTCCCAGTCAGGGTCTTGACGAAGATGTGCAT 18088546 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || || |||||||||| ||| ||||| |||| |||| || || ||||| || Sbjct 18076097 CTCCTTCTGGATATTGTAATCGGCGAGGGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAA 18076038 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||||| | || | || || ||||| ||||||| ||| || | Sbjct 18076037 GATGAGGCGCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGAATTTTCGCCTTC-ACGT 18075979 Query 33678 AGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTT 33735 ||| | ||||| | | | ||||| || | ||||||||| || || || | || || Sbjct 18075978 TGTCGATCGTGTC-CGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCGGTCAGGGTCTTC 18075920 Query 33736 ACAAAGATCTGCATA 33750 || |||||||||||| Sbjct 18075919 ACGAAGATCTGCATA 18075905 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || ||||| || | ||| | ||| || || |||||| || || |||||||||| Sbjct 18075905 ACCTCCCCTCAAGCGCAGCACGAGATGAAGGGTCGACTCTTTCTGGATATTGTAATCGGC 18075846 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| |||| |||| || || ||||| || || | ||||||||||| | || Sbjct 18075845 GAGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGTGG 18075786 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGAT-TCCA 33700 | || || ||||| ||||| |||| || | ||||| | | | |||| Sbjct 18075785 GATGCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTATCGATCGTGTC-CGAGCTCTCCA 18075727 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||| || || || || | || || || |||||||||||| Sbjct 18075726 CCTCGAGCGTGATGGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCATA 18075677 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || || |||||||||| ||| ||||||||||| |||| || || ||||| || Sbjct 18088965 CTCCTTCTGGATATTGTAATCGGCGAGGGTGCGTTCGTCCTCCAGCTGCTTCCCGGCGAA 18088906 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||||| |||| | || || || || ||| || || | || | Sbjct 18088905 GATGAGTCGCTGCTGATCCGGCGGGATGCCCTCCTTATCCTGAATCTT-TGCCTTCACGT 18088847 Query 33678 AGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTT 33735 ||| | ||||| | | | ||||| || | ||||||||| || || || | || || Sbjct 18088846 TGTCGATCGTGTC-CGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCGGTCAGGGTCTTC 18088788 Query 33736 ACAAAGATCTGCAT 33749 || ||||||||||| Sbjct 18088787 ACGAAGATCTGCAT 18088774 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || ||||||||||||| ||| ||||| |||| || | || || ||||| || Sbjct 18075641 CTCCTTCTGAATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 18075582 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| ||||||||| || | || | ||||| ||||| || || | | || | Sbjct 18075581 GATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGTATCTT-GGCCTTGACGT 18075523 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||| ||||| || | ||||||||| || || || | || || | Sbjct 18075522 TGTCGATGGTGTCGGAGCTCTCCACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTCA 18075463 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 18075462 CGAAGATCTGCAT 18075450 >seq8 Length=74329289 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | || || || ||||| |||||| || ||||| ||||||| Sbjct 36267191 CCGCCGCGCAGACGAAGGACTAAGTGCAGAGTCGACTCTTTCTGAATGTTATAATCGGCC 36267132 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || |||| ||| || ||||||||||||| | |||||| || | || Sbjct 36267131 AGTGTCCTCCCATCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCCGGAGGG 36267072 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | || || || || || ||| ||| |||| ||| | |||||| ||| ||| Sbjct 36267071 ATGCCCTCCTTATCCTGGATCTTCGCCTTC-ACATTGTCGATGGTGTC---TGAACTTTC 36267016 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| |||| ||||| || ||||| || | || || ||||| |||||||| Sbjct 36267015 CACCTCAAGAGTGATGGTCTTACCGGTCAGAGTCTTGACAAAAATCTGCAT 36266965 Score = 89.7 bits (98), Expect = 3e-13 Identities = 166/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || || |||| || | |||||| || |||||| ||| || || ||| Sbjct 36266747 AAAATCTGCATGCCTCCCCTCAGTCGCAGCACCAAGTGAAGAGTGGACTCCTTCTGGATG 36266688 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | | || | | || || | |||||| || ||||| || | | ||| Sbjct 36266687 TTGTAATCCGCCAAAGTCCTACCATCCTCAAGTTGTTTCCCAGCAAAGATAAGCCTTTGC 36266628 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 |||||| | || | ||||| ||||| |||||| | || |||| ||| | |||||| Sbjct 36266627 TGATCTGGGGGAATGCCTTCCTTGTCCTGAATTTT-GGCTTTGACATTGTCAATGGTGTC 36266569 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | |||||||| || || |||| || || |||||||| ||||| Sbjct 36266568 GGAGCTCTCAACTTCCAAAGTGATCGTCTTCCCAGTTAGGGTCTTGACAAAGATTTGCAT 36266509 Score = 86.0 bits (94), Expect = 4e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||| | ||||||||| ||| || || ||||||||||| | ||||| || | || || Sbjct 36266946 CACAAGATGTAGAGTTGACTCCTTCTGAATGTTGTAATCCGCCAGTGTCCGGCCATCCTC 36266887 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 | ||| || ||||| |||||||| | |||||||||| | || | ||||||||||| Sbjct 36266886 AAGTTGCTTCCCGGCGAAAATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTC 36266830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328684165897920