Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq6 84.2 2e-11 seq2 82.4 7e-11 >seq1 Length=40297282 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||||||||| ||| | ||| || || |||||||| || |||| Sbjct 18075643 GACTCCTTCTGAATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 18075584 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || ||||| |||||||| || || || || || | Sbjct 18075583 AAGATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGTATCTTGGCCTTGACG 18075524 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| |||||| |||| ||| | ||| || |||||||| || || Sbjct 18075523 TTGTCGATGGTGTCGGAGCTCTCCACCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTC 18075464 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 18075463 ACGAAGATCTGCATGCCT 18075446 >seq6 Length=53892272 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||| |||||||||||| || || | |||||| || |||||||| | | Sbjct 43309924 GATTCCTTTTGGATGTTGTAGTCGGCCAATGTCCTGCCATCTTCAAGTTGTTTACCAGCA 43309865 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || || || ||||| || || ||||| || |||||| |||| Sbjct 43309864 AAGATCAGCCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGAATTTTAGCCTTCACA 43309805 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || |||||||| | || || || | || | ||| || ||||| ||||| || Sbjct 43309804 TTGTCGACAGTATCAGAGCTTTCGACCTCAAGAGTAATCGTCTTCCCAGTGAGAGTCTTC 43309745 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 43309744 ACGAAAATCTGCAT 43309731 >seq2 Length=64235786 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || || |||||||| || |||| Sbjct 58015736 GACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCG 58015677 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| || || || || ||||| || || || || || |||| Sbjct 58015676 AAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 58015617 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| ||| ||| || |||| || | ||| || || ||||| || || Sbjct 58015616 TTGTCGATGGTGTCGCTCGACTCGACCTCGAGGGTTATCGTCTTCCCCGTCAGGGTCTTC 58015557 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 58015556 ACGAAGATCTGCATGGCT 58015539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476581703724360