Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq9 410 2e-108 seq10 149 9e-30 seq2 145 1e-28 seq1766 131 2e-24 seq626 131 2e-24 seq11 95.1 2e-13 >seq9 Length=39018107 Score = 410 bits (454), Expect = 2e-108 Identities = 452/595 (76%), Gaps = 9/595 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| |||||| | |||||| ||||||| | ||||||| |||| |||| || | Sbjct 26348496 GAGCCCCTGCTGGCCCCGAACCCGGACCGCTTCTGCATGTTCCCTATCCAGTACCCGCAG 26348437 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||||| |||||| || |||| ||||||||||| ||||||||||||||||||||||| Sbjct 26348436 ATCTGGGAGATGTAC-AAGCAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGACCT 26348378 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | | ||| |||||||| | || | ||||| ||||||||| ||| ||| || Sbjct 26348377 CTCCCAGGACCTCCGCCACTGGGAGGGCCTCACCGACGGCGAGCGCCACTTCGTCACCCA 26348318 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| |||||||| || ||||||| ||| |||||||| ||||||||| |||| ||||| Sbjct 26348317 CGTGCTCGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGCT 26348259 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | ||||| |||||||| | | ||||| || || ||||| |||||||||||||||| Sbjct 26348258 TCATGAAGGAGGTCCAGCTCTCGGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCG 26348199 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || | ||| ||||| | || ||||||||||||||| | | || Sbjct 26348198 AGAACATCCACTCCGAGATGTACAGCCTCCTACTGGAGACCTACGTCAAGGACTCCGCCG 26348139 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||||||| |||||| |||||| ||||||| || ||| | || |||||||||| Sbjct 26348138 AGAAGGACCGCCTCTTCCGCGCCGTCGACACCGTCCCGGCCGTCGCCCGCAAGGCCGACT 26348079 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTT 1456195 |||| | |||||| || | ||| || ||| || ||||| ||| ||| ||| Sbjct 26348078 GGGCCCTCCGCTGGATCGAC-GGCGGGGAGTC----CTTCGCGGAGCGCCTCCTCGCCTT 26348024 Query 1456196 TGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAA 1456254 ||| |||| ||||| ||||| ||||| ||||| |||||||||||||| ||||||||||| Sbjct 26348023 CGCCTGCGTTGAGGGGATCTTCTTCTCCGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAA 26347964 Query 1456255 GCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||| ||||||||||| || | || ||| ||||| | ||| ||||||||| Sbjct 26347963 GCGGGGCCTCATGCCGGGGC-TCACCTTCTCGAACGAGCTCATCTCTCGCGACGA 26347910 Score = 165 bits (182), Expect = 1e-34 Identities = 234/321 (73%), Gaps = 16/321 (5%) Strand=Plus/Minus Query 1456454 CACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACGTG 1456513 ||||| ||||| ||||| || |||||| || |||| ||||||||| | ||| | | Sbjct 26347902 CACTGCGACTTCGCCTGCCTCCTCTACTCGCTGCTGCGGAACAAGCCG---AGCGAGGAG 26347846 Query 1456514 CCCAAGCAGATCATCGTC---GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 | | || ||||| ||||||||||| |||||| ||||| ||| |||| || Sbjct 26347845 CGGGTGAAGGGGATCGTGCGGGAGGCCGTCGACATCGAGCGGGAGTTCGTCTGCGACGCG 26347786 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 |||||| || || | || |||||| || ||| | ||| |||||||||| || || Sbjct 26347785 CTGCCGTGCGCCCTGGTTGGGATGAACAGCGACC--TGATGGGCCAGTACATCGAGTTC- 26347729 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGG--AGAAGCACTACCGGACGGCCAAC 1456687 ||||||||||| || |||| |||||||||||||| || | || || |||| ||| Sbjct 26347728 GTCGCCGACCGGCTTCTCGGCGCGCTCGGCTGCGGCAAGGTGTACGACGTGACG---AAC 26347672 Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGC 1456747 |||||| ||||||||| | |||||||| |||| ||||||||||| |||||| || Sbjct 26347671 CCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAGCGG 26347612 Query 1456748 GT-GGCGAGTACGCCAAGGCC 1456767 || || |||||| |||||| Sbjct 26347611 GTCGGGGAGTACCAGAAGGCC 26347591 >seq10 Length=39358841 Score = 149 bits (164), Expect = 9e-30 Identities = 175/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||||||||| || | | ||| ||| |||| |||| || Sbjct 26614151 ATCTTCAAGGTGCTGAAGCAGGTGCACCCG-GA--CATCGGG--ATC-TCCAGCAAGGCC 26614098 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | ||| || Sbjct 26614097 ATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGTCCTCC 26614038 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || |||| ||||||| ||| ||| | | || ||||||||||||||||| Sbjct 26614037 CGCCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCGCCGTC 26613978 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || | | |||||| || |||| ||||||||||||||||||||||| Sbjct 26613977 CGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCA 26613926 Score = 111 bits (122), Expect = 2e-18 Identities = 171/235 (73%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| ||||| || | | || |||| || | |||| | Sbjct 3820865 ATCTTCAAGGTGCTGAAGCAGGTCCACCCG-GA--CATCGG--CATC-TCGAGCAAGGCG 3820812 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC-GGCACCGAGGCCGG 725029 ||| |||||||||| || |||||||||| |||| | | | ||| | | | || Sbjct 3820811 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGA--GAAGCTGGCCCAGGAGTCG- 3820755 Query 725030 TCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087 |||| |||||||| | ||||||| ||| ||| | | || ||||||||||| ||| Sbjct 3820754 TCGCGGCTGGCGCGGTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACGGCC 3820695 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | ||| ||| || || |||| ||||||||| || |||||||||| Sbjct 3820694 GTCCGCCTCGTGCTGCCCGGGGAGCTCGCCAAGCACGCCGTGTCGGAGGGCACCA 3820640 Score = 100 bits (110), Expect = 4e-15 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||||||||| || | | ||| ||| |||| |||| || Sbjct 26637606 ATCTTCAAGGTGCTGAAGCAGGTGCACCCT-GA--CATCGGG--ATC-TCCAGCAAGGCC 26637553 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | |||||| Sbjct 26637552 ATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAACTCGCCCAGGAGGCCTCG 26637493 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | || || | | ||||||| ||| ||| | | || |||||||||||||| || Sbjct 26637492 AGGCTAGCCAGGTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCGCGGTC 26637433 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | ||| || || |||| |||||||||||| || || |||| Sbjct 26637432 AGGCTCGTGCTCCCCGGGGAGCTCGCCAAGCACGCCGTCTCAGAAGGGACCA 26637381 >seq2 Length=64235786 Score = 145 bits (160), Expect = 1e-28 Identities = 174/232 (75%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| ||||| || | | || |||| |||| |||| || Sbjct 63169046 ATCTTCAAGGTGCTGAAGCAGGTCCACCCG-GA--CATCGG--CATC-TCCAGCAAGGCC 63168993 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | ||| || Sbjct 63168992 ATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGTCCTCC 63168933 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || |||| ||||||| ||| ||| | | || || |||||||||||||| Sbjct 63168932 CGCCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAAATCCAGACCGCCGTC 63168873 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| || ||| ||| || ||||||| ||||||||||||||||||||||| Sbjct 63168872 CGCCTCGTCTTGCCCGGGGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 63168821 >seq1766 Length=8545 Score = 131 bits (144), Expect = 2e-24 Identities = 171/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||||||||| || | | ||| ||| |||| |||| || Sbjct 1656 ATCTTCAAGGTGCTGAAGCAGGTGCACCCG-GA--CATCGGG--ATC-TCCAGCAAGGCC 1709 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||| || || |||||||||| |||| ||| | ||| || Sbjct 1710 ATGGGCATCATGAATTCCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGTCCTCC 1769 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || |||| ||||||| ||| ||| | | || ||||||||||||||||| Sbjct 1770 CGCCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCGCCGTC 1829 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || | | |||||| || |||| ||||||||| |||||||| |||| Sbjct 1830 CGGCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTGTCCGAGGGGACCA 1881 >seq626 Length=20894 Score = 131 bits (144), Expect = 2e-24 Identities = 171/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||||||||| || | | ||| ||| |||| |||| || Sbjct 12252 ATCTTCAAGGTGCTGAAGCAGGTGCACCCG-GA--CATCGGG--ATC-TCCAGCAAGGCC 12199 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| | | | ||| || Sbjct 12198 ATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTTGCCCAGGAGTCCTCC 12139 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||||| || |||| ||||||| ||| ||| | | || ||||||||||||||||| Sbjct 12138 CGCCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCGCCGTC 12079 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || | | |||||| || |||| |||||||||||| ||||| |||| Sbjct 12078 CGGCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCTGAGGGGACCA 12027 Score = 100 bits (110), Expect = 4e-15 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||||||||| || | | ||| ||| |||| |||| || Sbjct 2123 ATCTTCAAGGTGCTGAAGCAGGTGCACCCT-GA--CATCGGG--ATC-TCCAGCAAGGCC 2070 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || |||||||||| |||| ||| | |||||| Sbjct 2069 ATGGGCATCATGAACTCCTTCATCAACGACATCTTCGAGAAACTCGCCCAGGAGGCCTCG 2010 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | || || | | ||||||| ||| ||| | | || |||||||||||||| || Sbjct 2009 AGGCTAGCCAGGTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCGCGGTC 1950 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | ||| || || |||| |||||||||||| || || |||| Sbjct 1949 AGGCTCGTGCTCCCCGGGGAGCTCGCCAAGCACGCCGTCTCAGAAGGGACCA 1898 >seq11 Length=45509462 Score = 95.1 bits (104), Expect = 2e-13 Identities = 143/202 (71%), Gaps = 5/202 (2%) Strand=Plus/Plus Query 1455906 TTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGA 1455965 ||| ||| || || ||| ||||||||| |||||||| || |||||| ||||| || Sbjct 19117238 TTTCTTCCCCACCTCCGACGGCATCGTGCTTGAGAACCTCGCTATCCGCTTCATGAAGGA 19117297 Query 1455966 GGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCA 1456025 |||||| | | || || | || |||| ||||||||| ||||||| | |||||| Sbjct 19117298 GGTCCATCTCTCCAAGTCATGCGCTTTCTACGACTTCCAGATCACCATCGACAGCATCCA 19117357 Query 1456026 CTCTGAAACCTAC----TCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGG 1456081 ||| || ||| || ||||| || | ||| | | ||||| | |||||||| Sbjct 19117358 CTCCGAGGTGTACAGCCTC-CTCCTCCTCAAGACCCGCCCCGAGGACTTCGCCGAGAAGG 19117416 Query 1456082 ACCACCTCTTTCGCGCCATCGA 1456103 | ||||||||||| || ||||| Sbjct 19117417 AGCACCTCTTTCGTGCGATCGA 19117438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177333666950062