Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq6 89.7 4e-13 >seq1 Length=40297282 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || || || | ||| | ||| || ||||| || || ||||||||| | Sbjct 18088316 CCTCCGCGGAGCCTCAGGACGAGATGGAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCC 18088257 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| ||||||||||||| || |||||| | ||||| | ||| || || || || Sbjct 18088256 AGGGTGCGACCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCAGGAGGG 18088197 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || |||||| || | | | |||| || || | | ||| || Sbjct 18088196 ATACCTTCCTTGTCCTGTATCTTGGACTTGACGTTGTCTATTGTATCAGAGCTTTCCACC 18088137 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| ||||| || || || ||||| ||||| Sbjct 18088136 TCGAGCGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 18088090 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | |||| || | || | ||||| || || || |||||||| ||| Sbjct 18089001 GCCACCGCGGAGGCGCAGAACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAATCGGC 18088942 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | |||| ||||| || ||||| || |||||| | ||||| ||||| ||||||||||| Sbjct 18088941 GAGGGTGCGTTCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGTCGCTGCTGATCCGGCGG 18088882 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| ||||| ||||| |||| | | || | ||||| | | || || Sbjct 18088881 GATGCCCTCCTTATCCTGAATCTTTGCCTTCACGTTGTCGATCGTGTCCGAGCTCTCCAC 18088822 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || ||||| || ||||| ||||| ||||| Sbjct 18088821 CTCCAGCGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAGATCTGCAT 18088774 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | |||||||| || | ||| | || || || || || |||||||| ||| Sbjct 18088774 TGCCTCCCCTCAACCGCAGCACGAGATGGAGGGTCGACTCCTTCTGGATATTGTAATCGG 18088715 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| |||| || ||||| || |||||| | ||||| ||||| |||||||||| Sbjct 18088714 CGAGCGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGCG 18088655 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||| |||| | | || | ||||| | | || | Sbjct 18088654 GGATCCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATCGTGTCCGAGCTCTCCA 18088595 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || || ||||| || || || ||||| ||||| Sbjct 18088594 CCTCCAGCGTGATCGTCTTCCCAGTCAGGGTCTTGACGAAGATGTGCAT 18088546 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | || || || | ||| | ||| || || || ||||| ||||| ||| Sbjct 18088546 TGCCGCCACGGAGCCTCAGGACGAGATGGAGCGTCGACTCCTTCTGAATGTTGTAATCGG 18088487 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| ||||||||||||| || |||||| | ||||| | ||| || ||||| | Sbjct 18088486 CGAGGGTGCGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGAG 18088427 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || |||||| || | | | || | ||||| | | || | Sbjct 18088426 GGATGCCTTCCTTGTCCTGTATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCA 18088367 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 | || || || || | |||||| ||||| || || || || || |||||| || Sbjct 18088366 CCTCGAGCGTGATGGTTTTGCCGGTCAGGGTCTTGACGAATATCTGCATACCT 18088314 >seq6 Length=53892272 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||| || || | ||||| | || ||| Sbjct 13066301 ACCAAGTGCAGGGTCGATTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGCCCATCCTCG 13066360 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||| | || || || || || | ||||| || || | Sbjct 13066361 AGCTGCTTGCCTGCAAAGATGAGCCTTTGCTGGTCTGGGGGAATCCCCTCCTTGTCTTGG 13066420 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | ||||||| ||||| ||||| || |||| ||| Sbjct 13066421 ATCTTGGCCTTTACATTGTCGATTGTGTCTGAACTCTCAACCTCTAGGGTGATAGTCTTG 13066480 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||||||||| ||||||||||| Sbjct 13066481 CCAGTAAGAGTTTTCACGAAGATTTGCAT 13066509 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| || ||||| | | | | ||||||| Sbjct 43309483 ACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCTGCAAGCGTCCTCCCGTCTTCA 43309424 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || ||||||| | ||| || ||||| || | |||||| || || | Sbjct 43309423 AGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCTTGG 43309364 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||| | | ||||||||||| || || | || Sbjct 43309363 ATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACTTCTAGGGTAATTGTCTTC 43309304 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||||||||||||||| Sbjct 43309303 CCAGTGAGAGTCTTCACAAAGATTTGCAT 43309275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424908759325512