Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq9 118 1e-21 seq6 107 2e-18 seq10 96.9 4e-15 >seq1 Length=40297282 Score = 123 bits (136), Expect = 3e-23 Identities = 299/446 (67%), Gaps = 10/446 (2%) Strand=Plus/Plus Query 11498 CGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTG 11557 || ||||| || |||| ||| | || || || | ||||| |||||||| || || Sbjct 29952399 CGGTTAGTTGCTGCAACAACAATGATACCCGTATTTCCTTCAAAACCATCCATTTCTGTC 29952458 Query 11558 AGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGC 11615 | | ||||||| || || || || ||||||||| || | | | | |||| | | Sbjct 29952459 AACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTTCCTC 29952516 Query 11616 GTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 11675 ||| |||||| |||||||| ||||||| || ||||| || || ||| || || Sbjct 29952517 TCTGCCGGCCCACAGCATCAATTTCATCAACAAACACAATGCAGGGAGCATTCTCTTTGG 29952576 Query 11676 CGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT 11735 | | | || ||||||||||| || ||||| ||||||||||||||||| || || | Sbjct 29952577 CCTTCTTGAAAAGATCGCGAACTCTAGAAGCACCAACACCAACAAACATCTCTACGAACT 29952636 Query 11736 TTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAG 11793 | | || | || || ||||| ||| || |||||| || || || || || Sbjct 29952637 CAGAACCTGA--AATGGAGAAAAATGGAACACCTGCTTCACCAGCAATTGCCTTTGCAAG 29952694 Query 11794 GAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || || ||||| || ||||| ||| | |||||| | || ||||| || || Sbjct 29952695 CAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCTTAGGGATACGAGCCCC 29952754 Query 11854 ACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCA-CAATCTCTTCAAGTTCATCTT 11912 | || || | | ||||| |||| ||| ||||| |||| || | | | ||| || | | Sbjct 29952755 AATTGCAGTAAACCTCTCAGGTTTCTTTAGAAACTCCACCACTTCCATGAAG-TCCTGCT 29952813 Query 11913 TGGCCGCGTCAATCCCCTCAACATCA 11938 ||||| | |||| || |||||||| Sbjct 29952814 TGGCCTCATCAACACCAGCAACATCA 29952839 >seq9 Length=39018107 Score = 118 bits (130), Expect = 1e-21 Identities = 299/451 (66%), Gaps = 4/451 (1%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||||||||||||||| ||||||||||||||||| | || ||| ||||| Sbjct 26347601 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 26347660 Query 122431 AAGTCAAATGGATTCTTCGCGT--TCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGAC 122488 |||| || || ||| || ||| | || | | | || || | | | ||| || | Sbjct 26347661 CAGTCGAACGGGTTCGTCACGTCGTACACCTTGCCG-CAGCCGAGCGCGCC-GAGAAGCC 26347718 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 | || | || |||| ||||||| | |||| || |||||| || | ||| | Sbjct 26347719 GGTCGGCGACGAACTCGATGTACTGGCCCATCAGGTCGCTGTTCATCCCAACCAGGGCGC 26347778 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 | || || ||||| ||| |||| | ||| || || || ||||| |||||| | | Sbjct 26347779 ACGGCAGCGCGTCGCAGACGAACTCCCGCTCGATGTCGACGGCCTCCCGCACGATCCCCT 26347838 Query 122609 GGATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCAAACTCCT 122668 | || | || | || |||| | | |||| ||| || || Sbjct 26347839 TCACCCGCTCCTCGCTCGGCTTGTTCCGCAGCAGCGAGTAGAGGAGGCAGGCGAAGTCGC 26347898 Query 122669 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGAC 122728 |||||| ||||| || || || || || || || |||||| || || |||||||| | Sbjct 26347899 AGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGC 26347958 Query 122729 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788 |||||||||| | ||| | || |||||||| |||||||||||||| ||||| || | Sbjct 26347959 CCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCAACGC 26348018 Query 122789 ACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 | || || || | ||||| || |||||||| Sbjct 26348019 AGGCGAAGGCGAGGAGGCGCTCCGCGAAGGA 26348049 >seq6 Length=53892272 Score = 107 bits (118), Expect = 2e-18 Identities = 215/316 (68%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || ||||| || ||||| |||||||||||||| || Sbjct 15329246 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 15329187 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | |||||| | | ||| | ||||||||||| ||||||||||| || ||||| || Sbjct 15329186 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAATAAACACAATGCA 15329127 Query 11659 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 || || ||| | || | ||||| | || | ||| || ||||| ||||| | Sbjct 15329126 AGG-TGCTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCACCAACACCCA 15329068 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 |||||| ||||||||| | | || | ||| || |||||| || | ||||| | Sbjct 15329067 CAAACAACTCCACAAATTCGGATGCCGCACACGAGAAGAATGGCACGCCAGCCTCACCGG 15329008 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | | || | || | |||||||| || || || || ||| | ||||| ||| Sbjct 15329007 CCACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGGAGGACCGACAAGAAGACAACCTT 15328948 Query 11838 GGGGGATCTTGGCACC 11853 |||||| || || || Sbjct 15328947 TGGGGATTTTAGCCCC 15328932 >seq10 Length=39358841 Score = 96.9 bits (106), Expect = 4e-15 Identities = 243/361 (67%), Gaps = 10/361 (3%) Strand=Plus/Minus Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 || |||||||| ||||| || ||||| | |||||| |||||||| |||||| || | | Sbjct 16067097 CCGTCCATCTCAGTGAGCAACTGATTCAGTGTTTGCTCTCTCTCGTCATTTCCT--CCTC 16067040 Query 11603 CCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG 11660 | | |||| | | ||| | || || ||||||||||||||||||||||| | || | Sbjct 16067039 CGATGCCAGTTCCTCTCTGCCTCCCAACAGCATCAATCTCATCAATGAAGACCAAGCAAG 16066980 Query 11661 GTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAA 11720 | ||| | || | | ||| || || || ||||| | || ||||| |||| Sbjct 16066979 GCGAATTCGCCTTCGCCTTGTTAAACAGGTCTCGCACCCTCGAAGTGCCTACACCGACAA 16066920 Query 11721 ACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGA 11780 ||||||| | || | || |||| | | ||| ||||| | ||| || |||| Sbjct 16066919 ACATCTCGATGAACTCTGACCCAGACAGCGAAAAGAAAGGGACCCCAGCTTCTCCTGCGA 16066860 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | || ||| | | |||||| || || ||||| ||| | ||||| | ||| | Sbjct 16066859 TCGCCTTGGCCAACAAGGTCTTCCCTGTCCCTGGTGGCCCCACTAGAAGAACTCCTTTTG 16066800 Query 11841 GGAT-CTTGGCACCAC--TTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 |||| |||| |||| | |||| | |||| ||| | ||| || || |||||||||| Sbjct 16066799 GGATCCTTGCTCCCACGGCTGCAAACT-TCTC-CGGCGTCCTTAAG-AACTCCACAATCT 16066743 Query 11898 C 11898 | Sbjct 16066742 C 16066742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627993132669600