Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq9 187 3e-42 seq6 105 8e-18 >seq9 Length=39018107 Score = 187 bits (206), Expect = 3e-42 Identities = 314/451 (70%), Gaps = 4/451 (1%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || ||||| |||||||||||||||||||| |||||||| | || ||| |||||| Sbjct 26347601 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 26347660 Query 129788 AAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 | || || |||||| | || | || |||| | || || | | ||| || | Sbjct 26347661 CAGTCGAACGGGTTCGTCACGTCGTACACCTTGCCG-CAG-CCGAGCGCGCCGAGAAGCC 26347718 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | |||| |||| ||||||| |||| ||| |||||| || | ||| | Sbjct 26347719 GGTCGGCGACGAACTCGATGTACTGGCCCATCAGGTCGCTGTTCATCCCAACCAGGGCGC 26347778 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || |||||||| ||| |||| || ||| ||||| || || ||||||||||| | | Sbjct 26347779 ACGGCAGCGCGTCGCAGACGAACTCCCGCTCGATGTCGACGGCCTCCCGCACGATCCCCT 26347838 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCT 130025 | |||| || || | || |||| | | |||| ||| || || Sbjct 26347839 TCACCCGCTCCTCGCTCGGCTTGTTCCGCAGCAGCGAGTAGAGGAGGCAGGCGAAGTCGC 26347898 Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085 |||||| |||||||| || |||||||| || ||||||||| || || |||||||| | Sbjct 26347899 AGTGGAGGCCCTCGTCGCGAGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGC 26347958 Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145 |||||||||| | |||||| || || || || ||| ||||||||||||||||| || | Sbjct 26347959 CCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGAAGATCCCCTCAACGC 26348018 Query 130146 ACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 | ||||| || | ||| ||||| || ||||| Sbjct 26348019 AGGCGAAGGCGAGGAGGCGCTCCGCGAAGGA 26348049 >seq6 Length=53892272 Score = 105 bits (116), Expect = 8e-18 Identities = 191/277 (69%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| || |||||||| ||||| || | ||||||||| | Sbjct 15329246 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 15329187 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | ||| || | | ||| | || || || || || ||||| || || || || || Sbjct 15329186 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAATAAACACAATGCA 15329127 Query 14272 TGGTTGATTTTCACGG-GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCA 14330 ||| | ||| || || ||||| | || | |||||| ||||| ||||||| Sbjct 15329126 AGGT-GCTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCACCAACACCCA 15329068 Query 14331 CAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCG 14390 |||||| ||||||||| | || || | ||| || ||| || ||| || ||||| | Sbjct 15329067 CAAACAACTCCACAAATTCGGATGCCGCACACGAGAAGAATGGCACGCCAGCCTCACCGG 15329008 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | | || | || | ||||||||||| ||||| || Sbjct 15329007 CCACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGG 15328971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618396926591560