Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq9 149 7e-31 seq6 104 3e-17 seq1 104 3e-17 seq10 82.4 9e-11 >seq9 Length=39018107 Score = 149 bits (164), Expect = 7e-31 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| |||| || || || |||||||| ||||||||||| || | Sbjct 26348049 TCCTTCGCGGAGCGCCTCCTCGCCTTCGCCTGCGTTGAGGGGATCTTCTTCTCCGGCAGC 26347990 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||||||||||| || |||||||| || ||| |||||| ||| Sbjct 26347989 TTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGGCTCACCTTCTCGAAC 26347930 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| |||||||| |||||||| |||||| Sbjct 26347929 GAGCTCATCTCTCGCGACGAGGGCCTCCAC 26347900 >seq6 Length=53892272 Score = 104 bits (114), Expect = 3e-17 Identities = 269/408 (66%), Gaps = 4/408 (1%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| || || || |||||||| || | ||||||||| || Sbjct 15329246 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 15329187 Query 9673 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 | |||||| | | ||| | ||||| ||||| ||||||||||| || || ||||| Sbjct 15329186 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCGATCTCATCAATAAACACAATGCA 15329127 Query 9733 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 ||| ||||| || || ||||| | |||| || | | || || ||||| Sbjct 15329126 AGGT--GCTTTCGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCACCAACACCC 15329069 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9850 ||||||| ||||||||| | | || | ||| || ||| || || || ||||| Sbjct 15329068 ACAAACAACTCCACAAATTCGGATGCCGCACACGAGAAGAATGGCACGCCAGCCTCACCG 15329009 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 || | || | || | ||| ||||| || || || || ||| | || || |||| Sbjct 15329008 GCCACTGCCCTTGCCAAAAGGGTCTTCCCAGTCCCGGGAGGACCGACAAGAAGACAACCT 15328949 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATT 9970 || || || || || | ||| | ||||| | ||| | ||||| || | Sbjct 15328948 TTGGGGATTTTAGCCCCCAAAGCGGTGTACTTATCAGGGTTCTTCAAGAAATCAACCACC 15328889 Query 9971 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAAC 10018 |||| |||||| |||||| ||| ||| | ||||||| |||| Sbjct 15328888 TCTTGCAATTCCAATTTGGCTTGATCAGCCCCAGCTACATCGGCAAAC 15328841 >seq1 Length=40297282 Score = 104 bits (114), Expect = 3e-17 Identities = 296/446 (66%), Gaps = 12/446 (3%) Strand=Plus/Plus Query 9572 CGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTG 9629 || || || || || | |||| ||||| || ||| || ||||||||||||| |||| Sbjct 29952399 CGGTTAGTTGCTGCAACAACAATGATACCCGTATTTCCTT--CAAAACCATCCATTTCTG 29952456 Query 9630 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 9687 |||| || || |||| || || |||| ||||||||| || | | | | |||| | Sbjct 29952457 TCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTTCC 29952514 Query 9688 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GC 9746 | ||| ||||| |||||||| ||||||| || || ||||| || ||| || Sbjct 29952515 TCTCTGCCGGCCCACAGCATCAATTTCATCAACAAACACAATGCAGGGAGCATTCTCTTT 29952574 Query 9747 GAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAA 9806 | | ||| ||| ||||| || || | || || ||||||||||||||||| || | Sbjct 29952575 GGCCTTCTTGAAA-AGATCGCGAACTCTAGAAGCACCAACACCAACAAACATCTCTACGA 29952633 Query 9807 AGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCG 9865 | | | | ||| || | || || || ||| | |||||| ||||| || || Sbjct 29952634 ACTCAGAACCTGAA-ATGGAGAAAAATGGAACACCTGCTTCACCAGCAATTGCCTTTGCA 29952692 Query 9866 AGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCG 9925 || || || || || || ||||| ||| | || ||| |||| || || || Sbjct 29952693 AGCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCTTAGGGATACGAGCC 29952752 Query 9926 CCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCT 9985 ||| || || | |||||||||| ||| ||||| ||||| | ||| || || | Sbjct 29952753 CCAATTGCAGTAAACCTCTCAGGTTTCTTTAGAAACTCCACCACTTCCATGAAGTCCTGC 29952812 Query 9986 TTGGCGGCGTCAATCCCCTCAACATC 10011 ||||| | |||| || ||||||| Sbjct 29952813 TTGGCCTCATCAACACCAGCAACATC 29952838 >seq10 Length=39358841 Score = 82.4 bits (90), Expect = 9e-11 Identities = 194/283 (69%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | ||||| | ||| | || ||||||||| || ||||||||||| || Sbjct 16067188 ATCAAACCTTCCTGGCCTAAGCAAGGCAGAATCAAGGATTTCGGGACGATTCGTCGCTGC 16067129 Query 9586 GATGACAA-CAATAC-CTGTTTC-ATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 |||||| | || | | ||||| | | ||| |||| |||||||| || | | || || Sbjct 16067128 GATGACGATCACTCCACTGTTCCCACTAT---AACCGTCCATCTCAGTGAGCAACTGATT 16067072 Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCC 9700 | ||||| || | || ||||| || | | | | |||| | | ||| | || Sbjct 16067071 CAGTGTTTGCTCTCTCTCGTCATTTCCT--CCTCCGATGCCAGTTCCTCTCTGCCTCCCA 16067014 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAA 9758 || ||||||||||||||||||||||| | ||| || || ||||| || || | || Sbjct 16067013 ACAGCATCAATCTCATCAATGAAGACCAAGCAAGG-CGA-ATTCGCCTTCGCCTTGTTAA 16066956 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTC 9801 | || || || || | | | ||| ||||| ||||||||||| Sbjct 16066955 ACAGGTCTCGCACCCTCGAAGTGCCTACACCGACAAACATCTC 16066913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583224703447240