Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq9 228 9e-55 >seq9 Length=39018107 Score = 228 bits (252), Expect = 9e-55 Identities = 581/868 (67%), Gaps = 22/868 (3%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || ||||| | ||||||| | | |||| |||| ||| | ||| | || |||||| Sbjct 26348457 TTCCCTATCCAGTACCCGCAGATCTGGGAGATGTACAAGCAGGCGGAGGCCTCCTTCTGG 26348398 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 ||| ||||||| | |||||| || ||||| | ||||| |||| ||| | Sbjct 26348397 ACCGCCGAGGAGGTCGACCTCTCCCAGGACCTCCGCCACTGGGAGGGCCTCACCGACGGC 26348338 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 |||| || ||| ||| || || ||||||||||| || || || || || | Sbjct 26348337 GAGCGCCACTTCGTCACCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTC 26348278 Query 59742 GAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTAC 59801 || || | | | | ||| ||||| |||||| | | |||||||| | |||||| Sbjct 26348277 GAGAACCTCGCCGTCCGCTTCATGAAGGAGGTCCAGCTCTCGGAGGCCCGCGCCTTCTAC 26348218 Query 59802 GCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAA 59860 | | ||| ||| || |||| ||||||||||||| |||| ||| | | || | Sbjct 26348217 GGCTTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACAGCCTCCTACTGGAGAC 26348159 Query 59861 GTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGC 59920 | |||||||| | | ||||||| | || ||||| ||| | || || ||| || Sbjct 26348158 CTACGTCAAGGACTCCGCCGAGAAGGACCGCCTCTTCCGCGCCGTCGACACCGTCCCGGC 26348099 Query 59921 AGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCATTTGCA 59978 || | || || || |||||| | | ||||| || | | |||| || || || Sbjct 26348098 CGTCGCCCGCAAGGCCGACTGGGCCCTCCGCTGGATCGACGGCGGGGAG--TCCTTCGCG 26348041 Query 59979 CAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCT 60038 | || ||| | || || || ||||| || || ||||||||||| ||| ||||| || Sbjct 26348040 GAGCGCCTCCTCGCCTTCGCCTGCGTTGAGGGGATCTTCTTCTCCGGCAGCTTCTGCGCC 26347981 Query 60039 ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATT 60098 || ||||||||||| ||||| |||||||||||||| || | ||||| |||||||| || Sbjct 26347980 ATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGGCTCACCTTCTCGAACGAGCTCATC 26347921 Query 60099 TCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGGA 60157 || || |||||||||||||| || || || || | ||||| || | || ||| Sbjct 26347920 TCTCGCGACGAGGGCCTCCACTGCGACTTCGC-CTGCCTCCTCTACTCGCTGCT-GCGGA 26347863 Query 60158 AAAATGCCCTTCCA--AGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGC 60215 | || ||| | | || | | ||| || | | ||| || | ||| | Sbjct 26347862 ACAA-GCCGAGCGAGGAGCGGGTGAAGGGGATCGTGCGGGAGGCCGTCGACATCGAGCGG 26347804 Query 60216 GAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACG 60275 |||||| || || ||||| || ||| || | || ||| || | || ||| | Sbjct 26347803 GAGTTCGTCTGCGACGCGCTGCCGTGCGCCCTGGTTGGGATGAAC---AGCGACCTGATG 26347747 Query 60276 ---CAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAA-- 60330 |||||||| |||| ||||| ||||| || | | | | | || || ||| Sbjct 26347746 GGCCAGTACATCGAGTTCGTCGCCGACCGGCTTCTCGGCGCGCTCGGCTGCGG--CAAGG 26347689 Query 60331 TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCA 60390 | |||| ||||| ||||| ||||||||||||||| ||||||| || | |||||||||| Sbjct 26347688 TGTACGACGTGACGAACCCGTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCA 26347629 Query 60391 ACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||| ||||||||||||||||| || Sbjct 26347628 ACTTCTTCGAGAAGCGGGTCGGGGAGTA 26347601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548490853171440