Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq9 149 7e-31 seq10 105 7e-18 >seq9 Length=39018107 Score = 149 bits (164), Expect = 7e-31 Identities = 323/478 (68%), Gaps = 4/478 (1%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || ||||| || | || || ||||| || || |||||||| | ||| |||||||| ||| Sbjct 26347928 TCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAG 26347987 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||| || ||||||||| || || || || || ||||||| ||||| | |||||| Sbjct 26347988 AAGCTGCCGGAGAAGAAGATCCCCTCAACGCAGGCGAAGGCGAGGAGGCGCTCCGCGAAG 26348047 Query 74910 GGTGCATCGGAAGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGAC 74968 | | || ||| ||||| | ||||| || || || || ||| || ||||| Sbjct 26348048 GACTCCCCGCC-GTCGATCCAGCGGAGGGCCCAGTCGGCCTTGCGGGCGACGGCCGGGAC 26348106 Query 74969 AGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAAT 75028 || |||| || ||||||||| ||||||| ||| ||||||||| | || | Sbjct 26348107 GGTGTCGACGGCGCGGAAGAGGCGGTCCTTCTCGGCGGAGTCCTTGACGTAGGTCTCCAG 26348166 Query 75029 CATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAG 75087 | || |||| |||| || || || |||| || ||| |||| | ||||||| | Sbjct 26348167 TAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAAGG 26348225 Query 75088 ACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGA 75147 || ||||| | | ||| || ||||| || | | ||| ||||| | ||||| Sbjct 26348226 CGCGGGCCTCCGAGAGCTGGACCTCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGA 26348285 Query 75148 TGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAG 75207 ||||||| ||||||||||| || || || || ||| ||||||||||| |||| | Sbjct 26348286 TGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGGTGACGAAGTGGCGCTCGCCGTCGG 26348345 Query 75208 TGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 |||| ||||| | |||||| | | || | ||||||| | |||||||| Sbjct 26348346 TGAGGCCCTCCCAGTGGCGGAGGTCCTGGGAGAGGTCGACCTCCTCGGCGGTCCAGAA 26348403 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| || || |||||||||||||| | || ||||||| ||||||| Sbjct 26347601 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 26347660 Query 74523 CAGTCGAAAGGGTTC 74537 |||||||| |||||| Sbjct 26347661 CAGTCGAACGGGTTC 26347675 >seq10 Length=39358841 Score = 105 bits (116), Expect = 7e-18 Identities = 201/292 (69%), Gaps = 17/292 (6%) Strand=Plus/Plus Query 124551 TGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTG 124610 ||||||||||| | |||||| || | ||||||||| | ||| ||||||||| || | Sbjct 30164254 TGCTGCAACATCATCCACATAGCCTCCACGTAGTCCCCGGCGAACCCCCAGTCCCGGGAG 30164313 Query 124611 GCATCCAGGTTTCC------GAGCTCGATTGGCTTGGCCG-TCTTGTTCCACTCCGCCAA 124663 || | ||| ||||| |||| | | || | ||| ||||| ||| | ||| Sbjct 30164314 GCCTGCAGATTTCCCAGGAACAGCTTGCTCTGC-AGCCCGATCTTGATCC---GCCCCAC 30164369 Query 124664 ACCCAGTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTT 124720 || | || ||||| || ||||| || |||| || || ||| ||||||||||| Sbjct 30164370 GGCCCGAGTGATCTTCCGGGTCACGAAGTTCTCG---CCCCGCCGCGGGGACTCGTGGTT 30164426 Query 124721 GAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCA 124780 |||||| || || | ||||| |||| |||||| | |||||||||||| || ||| Sbjct 30164427 GAACAGGATCCCGTTGCACGCGAACAGCCCGTAGGCCTCGCGGTAGTTCACGGTGTACCA 30164486 Query 124781 ATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTG 124832 | | | | ||||||| || | |||||| || |||| ||| |||||| Sbjct 30164487 GTGCGCGGCGCACTTGGACGCGGCGTAGGGGGACCGCGGGTGGAACGGGGTG 30164538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547182134169800