Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_028896.1 Length=32675 Score E Sequences producing significant alignments: (Bits) Value seq2340 87.8 4e-13 >seq2340 Length=6312 Score = 87.8 bits (96), Expect = 4e-13 Identities = 164/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 11704 AGCATCACCGCCCGTGCGGCCTCATTCACACGCTGACGCCAGATAAGCTCACGATAAGCA 11763 ||||||||||| | | || || || || ||||||||| ||| | || || || || Sbjct 1429 AGCATCACCGCGAGCGACGCTTCGTTGACCCGCTGACGCAGGATCATTTCCCGGTAGGCG 1488 Query 11764 TTTTCCTCCAGCAGTTTGACGAGAGGCTCAGATTCCAGCGTCAGG-GTACGGGCGACCGC 11822 || |||| ||||| ||| || ||||| || |||||| ||| || | ||||| | | Sbjct 1489 TTCTCCTGCAGCAACTTGGTGATGGGCTCCGACTCCAGCTCAAGGCGTGC-GGCGATCTC 1547 Query 11823 CTCCTGCTGGTCTTCCGGGTAAAGGGAAATCAGTGT-CGCCTTGCGTTCAGCGAGAATGG 11881 |||||| || | || | ||| | | | | |||||||| || ||||| || Sbjct 1548 GGCCTGCTCATCCGCAGGCCATAGGCTGA-CGGCATAAGCCTTGCGCTCGGCGAGGATCT 1606 Query 11882 TTTCAAAGTCCAGCTCCTCGACCACATCCGGTGCGGGTAGCTGGTTCAGGTCGATA 11937 ||| ||||| | || ||||||||| | ||| ||||| ||||| | ||||||||| Sbjct 1607 GTTCGAAGTCGATCTGCTCGACCACCTGCGGCGCGGGCAGCTGACTGAGGTCGATA 1662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104432259740094