Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 8e-16 >seq1 Length=40297282 Score = 98.7 bits (108), Expect = 8e-16 Identities = 372/574 (65%), Gaps = 20/574 (3%) Strand=Plus/Plus Query 118488 ATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTG 118547 ||| |||||||||||||| || ||||| || ||||| || | ||| | | || Sbjct 21353399 ATAAACATGAGCATCCCCGATAACATGTACAAAATCACCGGGAGAAAGATCACAAACATG 21353458 Query 118548 AGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCAT 118607 |||||||||| |||| | | | || || || || || || || |||| ||||| Sbjct 21353459 AGCAATCATGCATGTAAGGAGAGCATAAGAAGCAACGTTGAATGGCACTCCCAATCCCAT 21353518 Query 118608 GTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACT 118667 ||| || || | ||| |||| ||| || || | |||| |||||||||||| ||||| Sbjct 21353519 GTCAGCAGAGCGCTGATACATTTGACATGACAATTCCCTGTTTGCAACATAGAACTGTGC 21353578 Query 118668 TATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTGGGCAGGATTCCAGGCTGTTAA 118727 | ||||| || || || || |||| | ||| | | ||||||||| || | | Sbjct 21353579 AAACATGTGGCAAGGTGGAAGCGCCATCAATTTCAAATCAGAAGGATTCCAAGCAG--AG 21353636 Query 118728 AACATGCCTTCTGCTATA---TGGTTCTACCTGTATACCCTCAATTAAATTCTGAATCTG 118784 | || ||| | ||| ||| | || || | ||| | || | | ||| Sbjct 21353637 AGTAT-AATTCGACGATAATCTGGATTATTCTTAATCTTGTAAATAACATCCAACAACTG 21353695 Query 118785 ATCCACACCCTTTCCAGTATACTGAGACTCGCATCCT-TTATATTCTGCCCCAAAAAATC 118843 ||| | || | |||||||| | || | |||| | |||| || |||||| | Sbjct 21353696 ATCAAATCCTTGGCCAGTATAGTCAG-CATGCATATTACTATACCTAGCACCAAAATGCC 21353754 Query 118844 TCCATTGAAAACCATAAACAGGCCCCAGATCTCC-----CTGGGAC-CTAAAATCTAAAC 118897 ||| |||||||||||||| || |||| || || || | | || | ||| || | Sbjct 21353755 GCCACTGAAAACCATAAACCGGTCCCAAGTCACCTTCTTCTCGATCTCTCAGATC-AAGC 21353813 Query 118898 CTACTTTTCTCTGAAATTCTTTTGACCCATTAGCATTCCAAATAGCAACTCCtttttttG 118957 | | | | | ||| | || |||| ||| ||| ||| || ||||||| Sbjct 21353814 C--CGT---AAAGGTAGTCTCTAGATGCATTGCCATCCCATATATGAATGCCTTTTTCCT 21353868 Query 118958 CCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAAGCTCCTCAACAACGCCTC 119017 ||| || | |||||||||||||||| ||||| ||||| || |||||||| || | Sbjct 21353869 GAAGAATCTTGGCATTTGTAGAACCACTTATGAACCACAGAAGTTCTTCAACAACTCCAC 21353928 Query 119018 TCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAA 119051 |||||| ||| | || ||||| || || || || Sbjct 21353929 GCCAAAATACTTTCTTAGTTGTCAAAAGAGGGAA 21353962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414451790340364