Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6 102 6e-17 seq8 91.5 1e-13 >seq6 Length=53892272 Score = 102 bits (112), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| ||||| ||||| |||||||| ||||| |||| ||||||||| | Sbjct 43309730 AATGCAGATTTTCGTGAAGACTCTCACTGGGAAGACGATTACTCTTGAGGTCGAAAGCTC 43309789 Query 27849 CGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || ||| ||||| || || ||||| |||||||| ||| |||| ||| Sbjct 43309790 TGATACTGTCGACAAT--GTGAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCGGAC 43309847 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| || | || ||||| || |||||| | || || | | | ||| |||| ||| Sbjct 43309848 CAGCAAAGGCTGATCTTTGCTGGTAAACAACTTGAAGATGGCAGGACATTGGCCGACTAC 43309907 Query 27967 AACATCCAAAAAGA 27980 ||||||||||| || Sbjct 43309908 AACATCCAAAAGGA 43309921 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/222 (70%), Gaps = 10/222 (5%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || ||||||||||||||| || || | || || || ||| | Sbjct 13058878 AATGCAAATCTTTGTCAAGACTCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 13058819 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| |||||| ||||| ||||| ||||| |||| || Sbjct 13058818 TGACACCATCGACAAT--GTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGAT 13058761 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGAT 27963 ||||| || | |||||||| || || || | || || | |||| || || | ||| Sbjct 13058760 CAGCAGAGGCTCATTTTTGCTGGGAAGCAGCTAGAAGATG---GCAGGACTCTGGCAGAT 13058704 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 || |||||||| ||||| ||| | || |||||| ||||| Sbjct 13058703 TATAACATCCAGAAAGAATCGACTCTTCACTTGGTTCTGCGT 13058662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || ||||| || || ||| || | || || || || | Sbjct 13065369 ATGCAGATTTTTGTGAAGACCCTTACCGGCAAGACTATCACCTTGGAAGTGGAGAGTTCT 13065310 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| | || |||||| || ||| ||||| ||||| |||| || | Sbjct 13065309 GACACGATTGATAAC--GTCAAAGCGAAGATACAGGACAAGGAAGGAATTCCCCCAGACC 13065252 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||||| ||||| || || || ||| | || || | | || || ||||||||| Sbjct 13065251 AGCAGCGGTTGATTTTCGCAGGGAAGCAACTCGAGGATGGTAGGAGTCTGGCCGATTACA 13065192 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| ||| | ||| | || | ||| ||||||| || Sbjct 13065191 ACATTCAAAAGGAGTCGACTCTCCATCTTGTCCTCCGTCTGCGTGGTGG 13065143 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| |||||||| || || || | || || |||||| | Sbjct 43309047 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACAATCACCCTCGAGGTGGAAAGCTCG 43309106 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| |||||| ||||| ||||| | || ||| | Sbjct 43309107 GACACAGTCGATAAT--GTGAAAGCAAAAATCCAGGACAAGGAAGGGATCCCTCCGGACC 43309164 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || |||| || | || | |||| ||||||| | Sbjct 43309165 AGCAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTATA 43309224 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||| || || ||| ||| | || ||||| Sbjct 43309225 ACATTCAGAAGGAGTCCACCCTCCACTTGGT 43309255 >seq8 Length=74329289 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || || || |||||||| || || | || || || ||| | Sbjct 36266508 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACTTTGGAAGTTGAGAGCTC 36266567 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || ||||| |||||| ||||| ||||| ||||| |||| || Sbjct 36266568 CGACACCATTGACAAT--GTCAAAGCCAAAATTCAGGACAAGGAAGGCATTCCCCCAGAT 36266625 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| || | || ||||| || |||||| | || || | | | ||| | |||||| Sbjct 36266626 CAGCAAAGGCTTATCTTTGCTGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTAC 36266685 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| |||| | || ||||| |||| || | || ||| Sbjct 36266686 AACATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGACTGAGGGGAGGC 36266736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355840927151577