Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucalyptus_20grandis_20[refseq_20GCF_5F000612305.1_202014-05-02] 4,951 sequences; 691,429,809 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq76 109 5e-19 seq8 109 5e-19 seq6 105 6e-18 seq2 91.5 1e-13 seq1 89.7 4e-13 seq5 82.4 7e-11 >seq76 Length=148772 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 146876 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 146817 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||||| || | || ||| |||||| ||| || Sbjct 146816 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTG 146757 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || ||| |||||||| |||| ||||| | || ||||| Sbjct 146756 GCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCACCTCCAGGGTGATGGTCTTCCCCGT 146698 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTT 39287 ||| ||||| || ||||| |||||||| Sbjct 146697 CAGGGTTTTCACGAAGATCTGCATCTT 146671 >seq8 Length=74329289 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 11070044 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 11069985 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||||| || | || ||| |||||| ||| || Sbjct 11069984 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTG 11069925 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || ||| |||||||| |||| ||||| | || ||||| Sbjct 11069924 GCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCACCTCCAGGGTGATGGTCTTCCCCGT 11069866 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTT 39287 ||| ||||| || ||||| |||||||| Sbjct 11069865 CAGGGTTTTCACGAAGATCTGCATCTT 11069839 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || ||||| ||||| || || || |||| || ||||| Sbjct 11075044 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 11074985 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||||| || | || ||| |||||| ||| || Sbjct 11074984 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTG 11074925 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || ||| |||||||| |||| ||||| | || ||||| Sbjct 11074924 GCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCACCTCCAGGGTGATGGTCTTCCCCGT 11074866 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTT 39287 ||| || || || ||||| |||||||| Sbjct 11074865 CAGGGTCTTCACGAAGATCTGCATCTT 11074839 >seq6 Length=53892272 Score = 105 bits (116), Expect = 6e-18 Identities = 168/237 (71%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | |||||| || || ||| ||| || || || |||||||| Sbjct 43309277 CATGCCTCCCCTGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGAATGTTATAATC 43309218 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGG 39172 ||| | ||||| | || || ||||| ||||| ||||| ||||| | |||||||| ||| Sbjct 43309217 GGCCAAGGTTCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGG 43309158 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCG 39229 ||| | || || |||||| |||||| ||| | | | || || || ||| Sbjct 43309157 AGGGATCCCT-TCCTTGTCCTGGATTTTTGCTTTCACATTATCGACTGTGTCCGAGCT-- 43309101 Query 39230 ACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||||| || | ||||| | || || || || ||||| |||||||||||||||| Sbjct 43309100 -TTCCACCTCGAGGGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCATCT 43309045 Score = 104 bits (114), Expect = 2e-17 Identities = 164/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | ||||| || || || |||||| || || |||||||| Sbjct 13065367 CATGCCTCCCCTCAGACGCAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATC 13065426 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || | | || || |||||||| || ||||| ||||| | |||||| || | Sbjct 13065427 TGCCAGAGTCCTACCATCCTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGG 13065486 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGA 39230 ||| | || || |||||| |||||| ||||| | | | ||||| |||| Sbjct 13065487 GGGAATGCCTTCCTTGTCCTGAATTTTCGCTTTGACATTGTCGATGGTATCAGAGCTC-- 13065544 Query 39231 CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| |||| ||||| | ||||| || || || || |||||||||||||| Sbjct 13065545 -TCCACTTCCAAAGTGATTGTCTTTCCAGTAAGGGTCTTGACAAAGATTTGCAT 13065597 >seq2 Length=64235786 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 58015745 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGC 58015686 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || || ||||||||||||| ||| | || ||| |||||| ||| || Sbjct 58015685 TTCCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTG 58015626 Query 39202 TGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTC 39261 || | | | | || ||||||||||| || || | || || | || |||||| Sbjct 58015625 GCCTTCACATTGTCGATGGTGTCGCTCGACTCGACCTCGAGGGTTATCGTCTTCCCCGTC 58015566 Query 39262 AGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 58015565 AGGGTCTTCACGAAGATCTGCAT 58015543 >seq1 Length=40297282 Score = 89.7 bits (98), Expect = 4e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| ||||| ||| || || || || |||||||| || || || |||| || ||||| Sbjct 18075653 ATGGAGCGTCGACTCCTTCTGAATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTG 18075594 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| || || || |||||||||||||||| || | || || |||||| || || Sbjct 18075593 CTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGTATCTT 18075534 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 |||| ||| | | | || ||| |||||| || | |||||| | || || | Sbjct 18075533 GGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGCGTGATCGTCTTGCCAG 18075475 Query 39260 TCAGCGTTTTAACAAAGATTTGCATCTTTACGCCGAGC 39297 |||| || || || ||||| ||||| | ||| |||| Sbjct 18075474 TCAGGGTCTTCACGAAGATCTGCATGCCTCCGCGGAGC 18075437 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || || || || ||||| || || | |||| || ||||| Sbjct 18075424 TGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCTGCCGTCCTCGAGCTGC 18075365 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || || ||||||||||||| || | || ||| |||||| || || Sbjct 18075364 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGTATCTTG 18075305 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | ||| ||| ||| || || | |||||| | || || || Sbjct 18075304 GCCTTGA-CGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGCGTGATGGTCTTGCCGGT 18075246 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTT 39288 ||| || || || ||||| ||||||||| Sbjct 18075245 CAGGGTCTTGACGAAGATCTGCATCTTT 18075218 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || ||||| |||||||| || || || | || || ||||| ||||| || || Sbjct 18078937 CTCCTTCTGGATATTGTAATCGGCGAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAA 18078996 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||||| || | || ||| |||||| ||| || |||| ||| Sbjct 18078997 GATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 18079055 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| ||| || || | ||||| | || || ||||| || || | Sbjct 18079056 TGTCGATGGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCA 18079115 Query 39272 CAAAGATTTGCATCT 39286 | ||||| ||||||| Sbjct 18079116 CGAAGATCTGCATCT 18079130 >seq5 Length=74729908 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | | | ||| | || || ||| ||| || || || || ||||| Sbjct 70522997 CATGCCTCCCCTGAGCCTCAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATC 70522938 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GG 39172 |||||| || || |||| || ||||| ||||| || || || || | ||||||||| || Sbjct 70522937 GGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCTGG 70522878 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGAC 39231 |||| | || ||| |||||| ||| || |||| ||| | | | || ||| | Sbjct 70522877 TGGG-ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTC 70522820 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || | || || | || || ||||| || || |||||||| ||||| Sbjct 70522819 TCAACCTCGAGGGTAATGGTCTTGCCGGTCAGGGTCTTGACAAAGATCTGCAT 70522767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429519681084263